Magnesium in PDB 6rca: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A

Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A

All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca was solved by I.I.Prokofev, P.A.Eistrikh-Geller, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.60 / 1.35
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 93.245, 93.245, 152.928, 90.00, 90.00, 120.00
R / Rfree (%) 13.5 / 16.9

Other elements in 6rca:

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A (pdb code 6rca). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca:

Magnesium binding site 1 out of 1 in 6rca

Go back to Magnesium Binding Sites List in 6rca
Magnesium binding site 1 out of 1 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:21.3
occ:0.65
O E:HOH640 2.0 41.4 1.0
O E:HOH716 2.0 31.4 1.0
O E:HOH710 2.1 23.0 1.0
O F:HOH719 2.1 52.3 1.0
O F:HOH648 2.1 33.0 1.0
O E:HOH554 4.4 27.7 1.0
OD2 E:ASP169 4.7 16.8 0.3

Reference:

I.I.Prokofev, P.A.Eistrikh-Geller, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov. X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A. To Be Published.
Page generated: Mon Dec 14 23:56:32 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy