Magnesium in PDB 6rca: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A

Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A

All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca was solved by I.I.Prokofev, P.A.Eistrikh-Geller, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.60 / 1.35
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 93.245, 93.245, 152.928, 90.00, 90.00, 120.00
R / Rfree (%) 13.5 / 16.9

Other elements in 6rca:

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A (pdb code 6rca). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca:

Magnesium binding site 1 out of 1 in 6rca

Go back to Magnesium Binding Sites List in 6rca
Magnesium binding site 1 out of 1 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:21.3
occ:0.65
O E:HOH640 2.0 41.4 1.0
O E:HOH716 2.0 31.4 1.0
O E:HOH710 2.1 23.0 1.0
O F:HOH719 2.1 52.3 1.0
O F:HOH648 2.1 33.0 1.0
O E:HOH554 4.4 27.7 1.0
OD2 E:ASP169 4.7 16.8 0.3

Reference:

I.I.Prokofev, P.A.Eistrikh-Geller, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov. X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A. To Be Published.
Page generated: Mon Dec 14 23:56:32 2020

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