Atomistry » Magnesium » PDB 6reu-6rkk » 6rev
Atomistry »
  Magnesium »
    PDB 6reu-6rkk »
      6rev »

Magnesium in PDB 6rev: Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule (pdb code 6rev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule, PDB code: 6rev:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6rev

Go back to Magnesium Binding Sites List in 6rev
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:36.5
occ:1.00
O1A A:GTP501 2.1 31.3 1.0
O2G A:GTP501 2.1 31.3 1.0
O1B A:GTP501 2.2 31.3 1.0
PB A:GTP501 2.4 31.3 1.0
PA A:GTP501 2.5 31.3 1.0
O3B A:GTP501 2.5 31.3 1.0
O3A A:GTP501 2.6 31.3 1.0
O2A A:GTP501 2.6 31.3 1.0
PG A:GTP501 2.9 31.3 1.0
CB A:GLN11 3.0 26.6 1.0
N A:GLN11 3.2 26.6 1.0
CA A:GLN11 3.7 26.6 1.0
OE1 A:GLN11 3.7 26.6 1.0
O3G A:GTP501 3.8 31.3 1.0
O2B A:GTP501 3.9 31.3 1.0
O1G A:GTP501 4.0 31.3 1.0
O5' A:GTP501 4.1 31.3 1.0
OE2 A:GLU71 4.2 33.9 1.0
CG A:GLN11 4.3 26.6 1.0
C A:GLY10 4.3 24.8 1.0
CD A:GLN11 4.5 26.6 1.0
CA A:GLY10 4.5 24.8 1.0
OD1 A:ASP69 4.7 29.7 1.0
C A:GLN11 4.7 26.6 1.0
N A:ALA12 4.7 25.0 1.0
OD2 A:ASP69 4.8 29.7 1.0
C5' A:GTP501 4.9 31.3 1.0

Magnesium binding site 2 out of 2 in 6rev

Go back to Magnesium Binding Sites List in 6rev
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg502

b:37.9
occ:1.00
O1A a:GTP501 2.1 34.8 1.0
O2G a:GTP501 2.1 34.8 1.0
O1B a:GTP501 2.2 34.8 1.0
PB a:GTP501 2.4 34.8 1.0
PA a:GTP501 2.5 34.8 1.0
O3B a:GTP501 2.5 34.8 1.0
O3A a:GTP501 2.6 34.8 1.0
O2A a:GTP501 2.6 34.8 1.0
PG a:GTP501 2.9 34.8 1.0
CB a:GLN11 3.0 30.1 1.0
N a:GLN11 3.2 30.1 1.0
CA a:GLN11 3.7 30.1 1.0
OE1 a:GLN11 3.7 30.1 1.0
O3G a:GTP501 3.8 34.8 1.0
O2B a:GTP501 3.9 34.8 1.0
O1G a:GTP501 4.0 34.8 1.0
O5' a:GTP501 4.1 34.8 1.0
OE2 a:GLU71 4.2 38.5 1.0
CG a:GLN11 4.3 30.1 1.0
C a:GLY10 4.3 28.9 1.0
CD a:GLN11 4.5 30.1 1.0
CA a:GLY10 4.5 28.9 1.0
OD1 a:ASP69 4.7 34.6 1.0
C a:GLN11 4.7 30.1 1.0
N a:ALA12 4.7 29.9 1.0
OD2 a:ASP69 4.8 34.6 1.0
C5' a:GTP501 4.9 34.8 1.0

Reference:

S.W.Manka, C.A.Moores. Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule To Be Published.
Page generated: Tue Oct 1 16:58:05 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy