Magnesium in PDB 6rev: Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule

The binding sites of Magnesium atom in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule (pdb code 6rev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule, PDB code: 6rev:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:36.5 occ:1.00 O1A A:GTP501 2.1 31.3 1.0 O2G A:GTP501 2.1 31.3 1.0 O1B A:GTP501 2.2 31.3 1.0 PB A:GTP501 2.4 31.3 1.0 PA A:GTP501 2.5 31.3 1.0 O3B A:GTP501 2.5 31.3 1.0 O3A A:GTP501 2.6 31.3 1.0 O2A A:GTP501 2.6 31.3 1.0 PG A:GTP501 2.9 31.3 1.0 CB A:GLN11 3.0 26.6 1.0 N A:GLN11 3.2 26.6 1.0 CA A:GLN11 3.7 26.6 1.0 OE1 A:GLN11 3.7 26.6 1.0 O3G A:GTP501 3.8 31.3 1.0 O2B A:GTP501 3.9 31.3 1.0 O1G A:GTP501 4.0 31.3 1.0 O5' A:GTP501 4.1 31.3 1.0 OE2 A:GLU71 4.2 33.9 1.0 CG A:GLN11 4.3 26.6 1.0 C A:GLY10 4.3 24.8 1.0 CD A:GLN11 4.5 26.6 1.0 CA A:GLY10 4.5 24.8 1.0 OD1 A:ASP69 4.7 29.7 1.0 C A:GLN11 4.7 26.6 1.0 N A:ALA12 4.7 25.0 1.0 OD2 A:ASP69 4.8 29.7 1.0 C5' A:GTP501 4.9 31.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg502 b:37.9 occ:1.00 O1A a:GTP501 2.1 34.8 1.0 O2G a:GTP501 2.1 34.8 1.0 O1B a:GTP501 2.2 34.8 1.0 PB a:GTP501 2.4 34.8 1.0 PA a:GTP501 2.5 34.8 1.0 O3B a:GTP501 2.5 34.8 1.0 O3A a:GTP501 2.6 34.8 1.0 O2A a:GTP501 2.6 34.8 1.0 PG a:GTP501 2.9 34.8 1.0 CB a:GLN11 3.0 30.1 1.0 N a:GLN11 3.2 30.1 1.0 CA a:GLN11 3.7 30.1 1.0 OE1 a:GLN11 3.7 30.1 1.0 O3G a:GTP501 3.8 34.8 1.0 O2B a:GTP501 3.9 34.8 1.0 O1G a:GTP501 4.0 34.8 1.0 O5' a:GTP501 4.1 34.8 1.0 OE2 a:GLU71 4.2 38.5 1.0 CG a:GLN11 4.3 30.1 1.0 C a:GLY10 4.3 28.9 1.0 CD a:GLN11 4.5 30.1 1.0 CA a:GLY10 4.5 28.9 1.0 OD1 a:ASP69 4.7 34.6 1.0 C a:GLN11 4.7 30.1 1.0 N a:ALA12 4.7 29.9 1.0 OD2 a:ASP69 4.8 34.6 1.0 C5' a:GTP501 4.9 34.8 1.0

S.W.Manka, C.A.Moores. Cryo-Em Structure of the N-Terminal Dc Repeat (Ndc) of Human Doublecortin (Dcx) Bound to 13-Protofilament Gdp-Microtubule To Be Published.