Magnesium in PDB 6ri7: Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor

Enzymatic activity of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor

All present enzymatic activity of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor:
2.7.7.6;

Other elements in 6ri7:

The structure of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor (pdb code 6ri7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor, PDB code: 6ri7:

Magnesium binding site 1 out of 1 in 6ri7

Go back to Magnesium Binding Sites List in 6ri7
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Greb Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1503

b:66.7
occ:1.00
 O3' R:G14 1.9 58.6 1.0
OD1 D:ASP462 2.0 56.9 1.0
OD1 D:ASP464 2.0 53.4 1.0
OD2 D:ASP462 2.1 56.9 1.0
CG D:ASP462 2.3 56.9 1.0
OD1 D:ASP460 2.5 53.9 1.0
OD2 D:ASP464 2.5 53.4 1.0
CG D:ASP464 2.6 53.4 1.0
C3' R:G14 3.0 58.6 1.0
C4' R:G14 3.4 58.6 1.0
CG D:ASP460 3.4 53.9 1.0
O2' R:G14 3.5 58.6 1.0
NH2 D:ARG425 3.6 43.0 1.0
OD2 D:ASP460 3.7 53.9 1.0
CB D:ASP462 3.8 56.9 1.0
C5' R:G14 3.9 58.6 1.0
C2' R:G14 3.9 58.6 1.0
CB D:ASP464 4.0 53.4 1.0
N D:ASP462 4.4 56.9 1.0
O D:ASP460 4.5 53.9 1.0
N D:ASP464 4.5 53.4 1.0
CA D:ASP462 4.6 56.9 1.0
CA D:ASP464 4.6 53.4 1.0
O4' R:G14 4.7 58.6 1.0
CZ D:ARG425 4.7 43.0 1.0
C D:ASP462 4.8 56.9 1.0
CB D:ASP460 4.8 53.9 1.0
N D:ASP460 4.8 53.9 1.0
C D:ASP460 4.9 53.9 1.0
C1' R:G14 5.0 58.6 1.0

Reference:

M.Abdelkareem, C.Saint-Andre, M.Takacs, G.Papai, C.Crucifix, X.Guo, J.Ortiz, A.Weixlbaumer. Structural Basis of Transcription: Rna Polymerase Backtracking and Its Reactivation. Mol.Cell V. 75 298 2019.
ISSN: ISSN 1097-2765
PubMed: 31103420
DOI: 10.1016/J.MOLCEL.2019.04.029
Page generated: Mon Dec 14 23:59:16 2020

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