Magnesium in PDB 6rke: Molybdenum Storage Protein - P212121, Adp, Molybdate
Protein crystallography data
The structure of Molybdenum Storage Protein - P212121, Adp, Molybdate, PDB code: 6rke
was solved by
U.Ermler,
S.Bruenle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.49 /
1.70
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
128.060,
148.860,
183.170,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.4 /
21.4
|
Other elements in 6rke:
The structure of Molybdenum Storage Protein - P212121, Adp, Molybdate also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Molybdenum Storage Protein - P212121, Adp, Molybdate
(pdb code 6rke). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Molybdenum Storage Protein - P212121, Adp, Molybdate, PDB code: 6rke:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 1 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg302
b:16.9
occ:1.00
|
O2A
|
B:ADP301
|
2.0
|
20.0
|
1.0
|
|
O
|
B:HOH405
|
2.1
|
24.9
|
0.6
|
|
O3B
|
B:ADP301
|
2.1
|
18.0
|
1.0
|
|
O
|
B:HOH421
|
2.1
|
16.1
|
1.0
|
|
O
|
B:HOH429
|
2.2
|
16.9
|
1.0
|
|
O4
|
B:PO4305
|
2.2
|
27.1
|
0.4
|
|
O
|
A:HOH426
|
2.2
|
20.6
|
1.0
|
|
PB
|
B:ADP301
|
3.3
|
17.8
|
1.0
|
|
PA
|
B:ADP301
|
3.3
|
18.8
|
1.0
|
|
P
|
B:PO4305
|
3.5
|
15.1
|
0.4
|
|
O3A
|
B:ADP301
|
3.6
|
20.8
|
1.0
|
|
O2B
|
B:ADP301
|
3.6
|
21.1
|
1.0
|
|
O3
|
B:PO4305
|
3.8
|
16.6
|
0.4
|
|
NH2
|
B:ARG83
|
3.8
|
21.7
|
1.0
|
|
NZ
|
B:LYS189
|
3.9
|
17.9
|
1.0
|
|
O5'
|
B:ADP301
|
3.9
|
17.8
|
1.0
|
|
O4
|
B:MOO304
|
4.0
|
27.6
|
0.6
|
|
NZ
|
B:LYS42
|
4.0
|
19.0
|
1.0
|
|
O1
|
B:PO4305
|
4.0
|
18.4
|
0.4
|
|
O
|
B:HOH427
|
4.1
|
17.8
|
1.0
|
|
O1
|
B:MOO304
|
4.1
|
22.0
|
0.6
|
|
O
|
B:HOH401
|
4.1
|
20.8
|
0.6
|
|
OD2
|
B:ASP170
|
4.1
|
18.4
|
1.0
|
|
NE2
|
A:GLN21
|
4.2
|
34.3
|
1.0
|
|
O
|
A:THR19
|
4.4
|
20.5
|
1.0
|
|
OE1
|
B:GLU227
|
4.6
|
18.4
|
1.0
|
|
O1A
|
B:ADP301
|
4.6
|
18.1
|
1.0
|
|
O1B
|
B:ADP301
|
4.6
|
19.8
|
1.0
|
|
MO
|
B:MOO304
|
4.6
|
23.4
|
0.6
|
|
O2
|
B:PO4305
|
4.6
|
16.5
|
0.4
|
|
CG
|
B:ASP170
|
4.7
|
18.6
|
1.0
|
|
OD1
|
B:ASP170
|
4.7
|
18.0
|
1.0
|
|
OG1
|
B:THR169
|
4.8
|
15.7
|
1.0
|
|
NH1
|
B:ARG168
|
4.9
|
25.3
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 2 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg302
b:15.2
occ:1.00
|
O2A
|
A:ATP301
|
1.9
|
17.3
|
1.0
|
|
O1B
|
A:ATP301
|
2.0
|
15.0
|
1.0
|
|
O
|
A:PRO227
|
2.0
|
15.5
|
1.0
|
|
OE2
|
A:GLU190
|
2.0
|
17.6
|
1.0
|
|
O
|
A:HOH408
|
2.1
|
15.3
|
1.0
|
|
O
|
A:HOH407
|
2.1
|
15.0
|
1.0
|
|
CD
|
A:GLU190
|
3.0
|
24.4
|
1.0
|
|
PA
|
A:ATP301
|
3.2
|
17.5
|
1.0
|
|
C
|
A:PRO227
|
3.2
|
16.4
|
1.0
|
|
PB
|
A:ATP301
|
3.3
|
17.1
|
1.0
|
|
OE1
|
A:GLU190
|
3.3
|
23.5
|
1.0
|
|
O3A
|
A:ATP301
|
3.6
|
19.5
|
1.0
|
|
OD2
|
A:ASP171
|
3.8
|
18.2
|
1.0
|
|
O
|
A:HOH440
|
4.0
|
18.6
|
1.0
|
|
O3G
|
A:ATP301
|
4.0
|
16.3
|
1.0
|
|
O
|
A:HOH444
|
4.1
|
16.3
|
1.0
|
|
CA
|
A:PRO227
|
4.1
|
17.5
|
1.0
|
|
NZ
|
A:LYS45
|
4.1
|
15.6
|
1.0
|
|
N
|
A:VAL228
|
4.2
|
15.9
|
1.0
|
|
O
|
A:HOH431
|
4.2
|
17.5
|
1.0
|
|
O5'
|
A:ATP301
|
4.2
|
19.2
|
1.0
|
|
C5'
|
A:ATP301
|
4.3
|
17.0
|
1.0
|
|
O1A
|
A:ATP301
|
4.3
|
19.9
|
1.0
|
|
O2B
|
A:ATP301
|
4.3
|
18.0
|
1.0
|
|
OD1
|
A:ASP171
|
4.3
|
17.2
|
1.0
|
|
CA
|
A:VAL228
|
4.3
|
15.4
|
1.0
|
|
O3B
|
A:ATP301
|
4.4
|
18.2
|
1.0
|
|
CG
|
A:GLU190
|
4.4
|
20.7
|
1.0
|
|
CB
|
A:PRO227
|
4.4
|
18.6
|
1.0
|
|
CG
|
A:ASP171
|
4.5
|
18.2
|
1.0
|
|
PG
|
A:ATP301
|
4.8
|
16.6
|
1.0
|
|
O
|
A:HOH416
|
4.9
|
16.6
|
1.0
|
|
CG1
|
A:VAL228
|
4.9
|
19.5
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 3 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg302
b:21.7
occ:1.00
|
O2A
|
D:ADP301
|
2.1
|
22.8
|
1.0
|
|
O1B
|
D:ADP301
|
2.1
|
25.3
|
1.0
|
|
O
|
C:HOH428
|
2.2
|
25.8
|
1.0
|
|
O
|
D:HOH436
|
2.2
|
32.5
|
0.7
|
|
O
|
D:HOH416
|
2.2
|
19.9
|
1.0
|
|
O1
|
D:PO4304
|
2.3
|
33.0
|
0.3
|
|
O
|
D:HOH413
|
2.3
|
21.4
|
1.0
|
|
PB
|
D:ADP301
|
3.3
|
24.8
|
1.0
|
|
PA
|
D:ADP301
|
3.4
|
23.2
|
1.0
|
|
P
|
D:PO4304
|
3.6
|
23.5
|
0.3
|
|
O3B
|
D:ADP301
|
3.7
|
30.3
|
1.0
|
|
O3A
|
D:ADP301
|
3.8
|
21.6
|
1.0
|
|
NH2
|
D:ARG83
|
3.8
|
25.7
|
1.0
|
|
NE2
|
C:GLN21
|
3.9
|
45.2
|
1.0
|
|
O2
|
D:MOO303
|
3.9
|
19.4
|
0.7
|
|
NZ
|
D:LYS189
|
4.0
|
20.9
|
1.0
|
|
O5'
|
D:ADP301
|
4.0
|
23.1
|
1.0
|
|
O4
|
D:PO4304
|
4.0
|
22.4
|
0.3
|
|
NZ
|
D:LYS42
|
4.0
|
20.4
|
1.0
|
|
O
|
D:HOH410
|
4.1
|
20.8
|
0.7
|
|
O
|
D:HOH440
|
4.1
|
19.1
|
1.0
|
|
OD2
|
D:ASP170
|
4.2
|
23.9
|
1.0
|
|
O3
|
D:PO4304
|
4.2
|
24.0
|
0.3
|
|
O1
|
D:MOO303
|
4.3
|
24.3
|
0.7
|
|
O
|
C:THR19
|
4.3
|
25.4
|
1.0
|
|
OE1
|
D:GLU227
|
4.5
|
18.9
|
1.0
|
|
O2B
|
D:ADP301
|
4.6
|
28.1
|
1.0
|
|
MO
|
D:MOO303
|
4.6
|
23.7
|
0.7
|
|
O1A
|
D:ADP301
|
4.6
|
23.0
|
1.0
|
|
CG
|
D:ASP170
|
4.7
|
19.1
|
1.0
|
|
O2
|
D:PO4304
|
4.7
|
21.9
|
0.3
|
|
OD1
|
D:ASP170
|
4.7
|
19.5
|
1.0
|
|
OG1
|
D:THR169
|
4.8
|
22.1
|
1.0
|
|
NH2
|
D:ARG168
|
4.8
|
24.3
|
1.0
|
|
O3
|
D:MOO303
|
4.8
|
22.3
|
0.7
|
|
CZ
|
D:ARG83
|
5.0
|
30.7
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 4 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg303
b:14.6
occ:1.00
|
O2A
|
C:ATP302
|
1.9
|
15.4
|
1.0
|
|
O1B
|
C:ATP302
|
1.9
|
18.8
|
1.0
|
|
OE2
|
C:GLU190
|
2.0
|
16.5
|
1.0
|
|
O
|
C:PRO227
|
2.0
|
16.3
|
1.0
|
|
O
|
C:HOH405
|
2.1
|
17.3
|
1.0
|
|
O
|
C:HOH408
|
2.1
|
15.3
|
1.0
|
|
CD
|
C:GLU190
|
3.0
|
19.1
|
1.0
|
|
PA
|
C:ATP302
|
3.2
|
17.2
|
1.0
|
|
PB
|
C:ATP302
|
3.2
|
17.3
|
1.0
|
|
C
|
C:PRO227
|
3.2
|
16.9
|
1.0
|
|
OE1
|
C:GLU190
|
3.3
|
21.4
|
1.0
|
|
O3A
|
C:ATP302
|
3.6
|
21.9
|
1.0
|
|
OD2
|
C:ASP171
|
3.9
|
17.6
|
1.0
|
|
O
|
C:HOH439
|
4.0
|
18.9
|
1.0
|
|
O
|
C:HOH463
|
4.0
|
17.0
|
1.0
|
|
O3G
|
C:ATP302
|
4.1
|
15.5
|
1.0
|
|
CA
|
C:PRO227
|
4.1
|
18.3
|
1.0
|
|
NZ
|
C:LYS45
|
4.1
|
14.3
|
1.0
|
|
O
|
C:HOH423
|
4.2
|
19.1
|
1.0
|
|
N
|
C:VAL228
|
4.2
|
16.4
|
1.0
|
|
O2B
|
C:ATP302
|
4.2
|
19.0
|
1.0
|
|
O5'
|
C:ATP302
|
4.2
|
23.4
|
1.0
|
|
C5'
|
C:ATP302
|
4.3
|
22.7
|
1.0
|
|
OD1
|
C:ASP171
|
4.3
|
16.5
|
1.0
|
|
O1A
|
C:ATP302
|
4.3
|
24.9
|
1.0
|
|
CG
|
C:GLU190
|
4.3
|
18.6
|
1.0
|
|
CA
|
C:VAL228
|
4.4
|
17.7
|
1.0
|
|
O3B
|
C:ATP302
|
4.4
|
17.5
|
1.0
|
|
CB
|
C:PRO227
|
4.4
|
16.7
|
1.0
|
|
CG
|
C:ASP171
|
4.5
|
15.0
|
1.0
|
|
PG
|
C:ATP302
|
4.8
|
16.6
|
1.0
|
|
O
|
C:HOH419
|
4.9
|
17.6
|
1.0
|
|
CG1
|
C:VAL228
|
5.0
|
18.7
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 5 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg302
b:17.6
occ:1.00
|
O2A
|
F:ADP301
|
2.0
|
21.4
|
1.0
|
|
O3B
|
F:ADP301
|
2.1
|
20.3
|
1.0
|
|
O
|
E:HOH414
|
2.2
|
20.6
|
1.0
|
|
O3
|
F:PO4305
|
2.2
|
16.1
|
0.4
|
|
O
|
F:HOH413
|
2.2
|
19.3
|
1.0
|
|
O
|
F:HOH410
|
2.2
|
18.9
|
1.0
|
|
PB
|
F:ADP301
|
3.3
|
21.3
|
1.0
|
|
PA
|
F:ADP301
|
3.3
|
21.2
|
1.0
|
|
P
|
F:PO4305
|
3.5
|
20.2
|
0.4
|
|
O2B
|
F:ADP301
|
3.7
|
25.0
|
1.0
|
|
O3A
|
F:ADP301
|
3.7
|
20.1
|
1.0
|
|
O2
|
F:PO4305
|
3.8
|
18.8
|
0.4
|
|
NH2
|
F:ARG83
|
3.9
|
26.4
|
1.0
|
|
O5'
|
F:ADP301
|
3.9
|
19.2
|
1.0
|
|
NZ
|
F:LYS189
|
4.0
|
19.4
|
1.0
|
|
O
|
F:HOH407
|
4.0
|
30.9
|
1.0
|
|
NZ
|
F:LYS42
|
4.0
|
19.5
|
1.0
|
|
O
|
F:HOH449
|
4.1
|
18.8
|
1.0
|
|
O3
|
F:MOO304
|
4.1
|
20.8
|
0.6
|
|
O1
|
F:PO4305
|
4.1
|
27.4
|
0.4
|
|
NE2
|
E:GLN21
|
4.2
|
30.4
|
1.0
|
|
OD2
|
F:ASP170
|
4.2
|
19.7
|
1.0
|
|
O
|
E:THR19
|
4.3
|
21.4
|
1.0
|
|
O1
|
F:MOO304
|
4.4
|
19.9
|
0.6
|
|
OE1
|
F:GLU227
|
4.5
|
19.8
|
1.0
|
|
O4
|
F:PO4305
|
4.6
|
20.3
|
0.4
|
|
O1A
|
F:ADP301
|
4.6
|
21.0
|
1.0
|
|
O1B
|
F:ADP301
|
4.6
|
25.1
|
1.0
|
|
MO
|
F:MOO304
|
4.7
|
20.7
|
0.6
|
|
CG
|
F:ASP170
|
4.7
|
16.6
|
1.0
|
|
OD1
|
F:ASP170
|
4.7
|
17.0
|
1.0
|
|
OG1
|
F:THR169
|
4.8
|
21.3
|
1.0
|
|
NH2
|
F:ARG168
|
4.9
|
25.7
|
1.0
|
|
O4
|
F:MOO304
|
5.0
|
19.0
|
0.6
|
|
Magnesium binding site 6 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 6 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg302
b:19.5
occ:1.00
|
O2A
|
E:ATP301
|
1.9
|
20.4
|
1.0
|
|
O1B
|
E:ATP301
|
1.9
|
18.7
|
1.0
|
|
OE2
|
E:GLU190
|
2.0
|
21.7
|
1.0
|
|
O
|
E:PRO227
|
2.1
|
20.6
|
1.0
|
|
O
|
E:HOH409
|
2.1
|
20.1
|
1.0
|
|
O
|
E:HOH410
|
2.1
|
19.0
|
1.0
|
|
CD
|
E:GLU190
|
3.0
|
22.5
|
1.0
|
|
PA
|
E:ATP301
|
3.2
|
18.0
|
1.0
|
|
PB
|
E:ATP301
|
3.2
|
19.3
|
1.0
|
|
C
|
E:PRO227
|
3.3
|
20.1
|
1.0
|
|
OE1
|
E:GLU190
|
3.3
|
25.2
|
1.0
|
|
O3A
|
E:ATP301
|
3.6
|
22.1
|
1.0
|
|
OD2
|
E:ASP171
|
3.8
|
19.3
|
1.0
|
|
O
|
F:HOH435
|
3.9
|
17.7
|
1.0
|
|
NZ
|
E:LYS45
|
4.1
|
15.5
|
1.0
|
|
O
|
E:HOH443
|
4.1
|
18.9
|
1.0
|
|
O3G
|
E:ATP301
|
4.1
|
15.3
|
1.0
|
|
CA
|
E:PRO227
|
4.1
|
19.6
|
1.0
|
|
O
|
E:HOH447
|
4.2
|
25.5
|
1.0
|
|
N
|
E:VAL228
|
4.2
|
20.6
|
1.0
|
|
O2B
|
E:ATP301
|
4.3
|
20.0
|
1.0
|
|
O5'
|
E:ATP301
|
4.3
|
24.8
|
1.0
|
|
O1A
|
E:ATP301
|
4.3
|
25.4
|
1.0
|
|
OD1
|
E:ASP171
|
4.3
|
21.3
|
1.0
|
|
C5'
|
E:ATP301
|
4.3
|
24.4
|
1.0
|
|
O3B
|
E:ATP301
|
4.3
|
18.0
|
1.0
|
|
CG
|
E:GLU190
|
4.4
|
23.2
|
1.0
|
|
CA
|
E:VAL228
|
4.4
|
20.9
|
1.0
|
|
CB
|
E:PRO227
|
4.5
|
19.0
|
1.0
|
|
CG
|
E:ASP171
|
4.5
|
21.5
|
1.0
|
|
PG
|
E:ATP301
|
4.8
|
20.3
|
1.0
|
|
CG1
|
E:VAL228
|
4.9
|
23.1
|
1.0
|
|
O2G
|
E:ATP301
|
4.9
|
14.3
|
1.0
|
|
O
|
E:HOH408
|
5.0
|
19.4
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 7 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg302
b:24.1
occ:1.00
|
O2A
|
H:ADP301
|
2.1
|
26.1
|
1.0
|
|
O
|
G:HOH437
|
2.1
|
28.9
|
1.0
|
|
O
|
H:HOH410
|
2.2
|
25.6
|
1.0
|
|
O4
|
H:PO4305
|
2.2
|
31.1
|
0.3
|
|
O
|
H:HOH427
|
2.2
|
33.1
|
0.7
|
|
O
|
H:HOH409
|
2.2
|
25.5
|
1.0
|
|
O3B
|
H:ADP301
|
2.2
|
27.6
|
1.0
|
|
PB
|
H:ADP301
|
3.3
|
29.8
|
1.0
|
|
P
|
H:PO4305
|
3.4
|
26.7
|
0.3
|
|
PA
|
H:ADP301
|
3.4
|
28.2
|
1.0
|
|
O2B
|
H:ADP301
|
3.6
|
35.3
|
1.0
|
|
O1
|
H:PO4305
|
3.6
|
28.3
|
0.3
|
|
O3A
|
H:ADP301
|
3.7
|
32.1
|
1.0
|
|
O2
|
H:MOO304
|
3.8
|
31.8
|
0.7
|
|
NZ
|
H:LYS189
|
3.9
|
29.4
|
1.0
|
|
NH2
|
H:ARG83
|
3.9
|
29.8
|
1.0
|
|
O2
|
H:PO4305
|
4.0
|
26.3
|
0.3
|
|
O5'
|
H:ADP301
|
4.0
|
29.3
|
1.0
|
|
NZ
|
H:LYS42
|
4.0
|
29.3
|
1.0
|
|
O
|
H:HOH403
|
4.0
|
27.6
|
0.7
|
|
O
|
H:HOH429
|
4.0
|
29.4
|
1.0
|
|
NE2
|
G:GLN21
|
4.0
|
42.4
|
1.0
|
|
OD2
|
H:ASP170
|
4.1
|
25.5
|
1.0
|
|
O3
|
H:MOO304
|
4.2
|
27.2
|
0.7
|
|
O
|
G:THR19
|
4.4
|
30.0
|
1.0
|
|
OE1
|
H:GLU227
|
4.5
|
24.7
|
1.0
|
|
O3
|
H:PO4305
|
4.6
|
27.4
|
0.3
|
|
MO
|
H:MOO304
|
4.6
|
30.0
|
0.7
|
|
CG
|
H:ASP170
|
4.6
|
23.5
|
1.0
|
|
O1A
|
H:ADP301
|
4.6
|
26.6
|
1.0
|
|
O1B
|
H:ADP301
|
4.7
|
35.5
|
1.0
|
|
OG1
|
H:THR169
|
4.7
|
28.1
|
1.0
|
|
OD1
|
H:ASP170
|
4.7
|
25.3
|
1.0
|
|
O4
|
H:MOO304
|
4.8
|
27.7
|
0.7
|
|
NH2
|
H:ARG168
|
5.0
|
32.6
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 8 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg302
b:19.8
occ:1.00
|
O2A
|
G:ATP301
|
1.9
|
21.6
|
1.0
|
|
O1B
|
G:ATP301
|
1.9
|
25.0
|
1.0
|
|
O
|
G:HOH414
|
2.0
|
17.6
|
1.0
|
|
OE2
|
G:GLU190
|
2.0
|
22.9
|
1.0
|
|
O
|
G:PRO227
|
2.1
|
22.2
|
1.0
|
|
O
|
G:HOH411
|
2.1
|
18.9
|
1.0
|
|
CD
|
G:GLU190
|
3.0
|
23.1
|
1.0
|
|
PB
|
G:ATP301
|
3.2
|
18.9
|
1.0
|
|
PA
|
G:ATP301
|
3.2
|
22.9
|
1.0
|
|
OE1
|
G:GLU190
|
3.3
|
23.8
|
1.0
|
|
C
|
G:PRO227
|
3.3
|
22.2
|
1.0
|
|
O3A
|
G:ATP301
|
3.6
|
24.2
|
1.0
|
|
OD2
|
G:ASP171
|
3.9
|
22.6
|
1.0
|
|
O
|
H:HOH428
|
4.0
|
19.5
|
1.0
|
|
O3G
|
G:ATP301
|
4.0
|
20.3
|
1.0
|
|
O
|
G:HOH444
|
4.0
|
21.2
|
1.0
|
|
NZ
|
G:LYS45
|
4.1
|
18.1
|
1.0
|
|
CA
|
G:PRO227
|
4.1
|
20.1
|
1.0
|
|
O2B
|
G:ATP301
|
4.2
|
19.3
|
1.0
|
|
O
|
G:HOH423
|
4.2
|
19.7
|
1.0
|
|
N
|
G:VAL228
|
4.2
|
23.1
|
1.0
|
|
O5'
|
G:ATP301
|
4.3
|
23.5
|
1.0
|
|
OD1
|
G:ASP171
|
4.3
|
20.8
|
1.0
|
|
C5'
|
G:ATP301
|
4.3
|
24.8
|
1.0
|
|
O1A
|
G:ATP301
|
4.3
|
27.3
|
1.0
|
|
CG
|
G:GLU190
|
4.4
|
22.7
|
1.0
|
|
O3B
|
G:ATP301
|
4.4
|
17.4
|
1.0
|
|
CA
|
G:VAL228
|
4.4
|
20.9
|
1.0
|
|
CB
|
G:PRO227
|
4.5
|
24.2
|
1.0
|
|
CG
|
G:ASP171
|
4.5
|
17.6
|
1.0
|
|
PG
|
G:ATP301
|
4.7
|
20.7
|
1.0
|
|
CG1
|
G:VAL228
|
4.9
|
25.2
|
1.0
|
|
O
|
G:HOH420
|
4.9
|
20.9
|
1.0
|
|
O2G
|
G:ATP301
|
5.0
|
20.2
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 9 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg303
b:12.0
occ:0.50
|
O2A
|
J:ADP301
|
2.0
|
26.6
|
1.0
|
|
O1B
|
J:ADP301
|
2.1
|
23.0
|
1.0
|
|
O
|
J:HOH426
|
2.1
|
31.1
|
1.0
|
|
O
|
J:HOH423
|
2.2
|
21.9
|
1.0
|
|
O
|
J:HOH408
|
2.2
|
24.9
|
1.0
|
|
O
|
J:HOH427
|
2.3
|
26.6
|
1.0
|
|
PB
|
J:ADP301
|
3.3
|
26.7
|
1.0
|
|
PA
|
J:ADP301
|
3.3
|
26.0
|
1.0
|
|
O3A
|
J:ADP301
|
3.8
|
25.7
|
1.0
|
|
O3B
|
J:ADP301
|
3.8
|
33.6
|
1.0
|
|
NZ
|
J:LYS189
|
3.9
|
22.6
|
1.0
|
|
O5'
|
J:ADP301
|
3.9
|
27.3
|
1.0
|
|
O1
|
J:PO4305
|
4.0
|
29.1
|
0.5
|
|
NH2
|
J:ARG83
|
4.0
|
32.4
|
1.0
|
|
NZ
|
J:LYS42
|
4.0
|
25.9
|
1.0
|
|
O4
|
J:MOO304
|
4.0
|
29.5
|
0.5
|
|
O
|
J:HOH424
|
4.0
|
25.8
|
1.0
|
|
O
|
J:HOH457
|
4.0
|
25.1
|
1.0
|
|
OD2
|
J:ASP170
|
4.1
|
25.4
|
1.0
|
|
O2
|
J:MOO304
|
4.2
|
25.5
|
0.5
|
|
O4
|
J:PO4305
|
4.2
|
30.8
|
0.5
|
|
NE2
|
I:GLN21
|
4.3
|
42.0
|
1.0
|
|
O
|
I:THR19
|
4.4
|
29.3
|
1.0
|
|
OE1
|
J:GLU227
|
4.5
|
32.4
|
1.0
|
|
O2B
|
J:ADP301
|
4.6
|
29.8
|
1.0
|
|
CG
|
J:ASP170
|
4.6
|
20.3
|
1.0
|
|
P
|
J:PO4305
|
4.6
|
26.6
|
0.5
|
|
O1A
|
J:ADP301
|
4.6
|
23.1
|
1.0
|
|
MO
|
J:MOO304
|
4.6
|
24.9
|
0.5
|
|
OD1
|
J:ASP170
|
4.7
|
22.3
|
1.0
|
|
OG1
|
J:THR169
|
4.7
|
24.1
|
1.0
|
|
NH2
|
J:ARG168
|
4.8
|
28.3
|
1.0
|
|
O3
|
J:PO4305
|
4.8
|
22.6
|
0.5
|
|
O3
|
J:MOO304
|
4.9
|
21.7
|
0.5
|
|
Magnesium binding site 10 out
of 12 in 6rke
Go back to
Magnesium Binding Sites List in 6rke
Magnesium binding site 10 out
of 12 in the Molybdenum Storage Protein - P212121, Adp, Molybdate
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Molybdenum Storage Protein - P212121, Adp, Molybdate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg302
b:20.0
occ:1.00
|
O1B
|
I:ATP301
|
1.9
|
22.9
|
1.0
|
|
O2A
|
I:ATP301
|
1.9
|
23.4
|
1.0
|
|
OE2
|
I:GLU190
|
2.0
|
25.3
|
1.0
|
|
O
|
I:PRO227
|
2.0
|
24.0
|
1.0
|
|
O
|
I:HOH410
|
2.1
|
22.4
|
1.0
|
|
O
|
I:HOH403
|
2.1
|
18.8
|
1.0
|
|
CD
|
I:GLU190
|
3.0
|
26.9
|
1.0
|
|
PB
|
I:ATP301
|
3.2
|
24.1
|
1.0
|
|
PA
|
I:ATP301
|
3.2
|
25.1
|
1.0
|
|
C
|
I:PRO227
|
3.2
|
20.6
|
1.0
|
|
OE1
|
I:GLU190
|
3.3
|
28.9
|
1.0
|
|
O3A
|
I:ATP301
|
3.6
|
27.9
|
1.0
|
|
OD2
|
I:ASP171
|
3.8
|
25.2
|
1.0
|
|
O
|
I:HOH440
|
3.9
|
19.1
|
1.0
|
|
NZ
|
I:LYS45
|
4.0
|
22.2
|
1.0
|
|
CA
|
I:PRO227
|
4.1
|
24.5
|
1.0
|
|
O3G
|
I:ATP301
|
4.1
|
20.0
|
1.0
|
|
O
|
J:HOH442
|
4.1
|
24.7
|
1.0
|
|
O2B
|
I:ATP301
|
4.2
|
22.9
|
1.0
|
|
N
|
I:VAL228
|
4.2
|
25.4
|
1.0
|
|
O
|
I:HOH411
|
4.2
|
25.6
|
1.0
|
|
O5'
|
I:ATP301
|
4.2
|
28.2
|
1.0
|
|
OD1
|
I:ASP171
|
4.3
|
20.9
|
1.0
|
|
O1A
|
I:ATP301
|
4.3
|
33.0
|
1.0
|
|
C5'
|
I:ATP301
|
4.3
|
26.3
|
1.0
|
|
CA
|
I:VAL228
|
4.3
|
24.5
|
1.0
|
|
CG
|
I:GLU190
|
4.3
|
26.2
|
1.0
|
|
O3B
|
I:ATP301
|
4.4
|
24.0
|
1.0
|
|
CB
|
I:PRO227
|
4.4
|
26.3
|
1.0
|
|
CG
|
I:ASP171
|
4.5
|
25.1
|
1.0
|
|
PG
|
I:ATP301
|
4.8
|
22.3
|
1.0
|
|
CG1
|
I:VAL228
|
4.8
|
20.0
|
1.0
|
|
O
|
I:HOH406
|
5.0
|
22.8
|
1.0
|
|
Reference:
S.Brunle,
M.L.Eisinger,
J.Poppe,
D.J.Mills,
J.D.Langer,
J.Vonck,
U.Ermler.
Molybdate Pumping Into the Molybdenum Storage Protein Via An Atp-Powered Piercing Mechanism. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31811022
DOI: 10.1073/PNAS.1913031116
Page generated: Tue Oct 1 17:03:10 2024
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