Magnesium in PDB 6rmc: Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp

The structure of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp, PDB code: 6rmc was solved by F.Hamann, P.Neumann, A.Schmitt, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.90 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.730, 113.690, 191.740, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 25

The binding sites of Magnesium atom in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp (pdb code 6rmc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp, PDB code: 6rmc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:53.7 occ:1.00 O A:HOH1115 2.1 48.2 1.0 O A:HOH1109 2.1 49.4 1.0 O A:HOH1102 2.1 42.8 1.0 O A:HOH1118 2.1 41.0 1.0 OG1 A:THR327 2.1 61.8 1.0 O1B A:ADP1001 2.1 73.1 1.0 CB A:THR327 3.3 63.4 1.0 PB A:ADP1001 3.3 74.5 1.0 O3B A:ADP1001 3.5 65.8 1.0 OD1 A:ASP418 3.7 60.8 1.0 O A:SER578 3.7 62.5 1.0 OE2 A:GLU419 3.7 61.4 1.0 O2A A:ADP1001 3.8 82.3 1.0 CG2 A:THR327 4.1 53.4 1.0 N A:THR327 4.2 54.4 1.0 O2B A:ADP1001 4.3 73.2 1.0 CA A:THR327 4.3 57.8 1.0 O3A A:ADP1001 4.3 64.0 1.0 C A:SER578 4.4 56.4 1.0 CD A:GLU419 4.4 57.4 1.0 O A:THR577 4.4 49.7 1.0 O A:HOH1101 4.4 41.0 1.0 PA A:ADP1001 4.5 80.9 1.0 NE2 A:GLN350 4.5 57.5 1.0 CG A:ASP418 4.5 59.5 1.0 CG A:GLU419 4.6 56.7 1.0 OD2 A:ASP418 4.7 58.4 1.0 CA A:SER578 4.8 50.4 1.0 O1A A:ADP1001 4.8 82.4 1.0 NZ A:LYS326 4.9 55.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Deah-Box Atpase PRP2 in Complex with SPP2 and Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:65.3 occ:1.00 O B:HOH1115 2.1 52.0 1.0 O B:HOH1119 2.1 48.8 1.0 O B:HOH1110 2.1 48.9 1.0 O B:HOH1114 2.1 47.0 1.0 OG1 B:THR327 2.1 50.0 1.0 O3B B:ADP1001 2.3 66.3 1.0 CB B:THR327 3.3 55.6 1.0 PB B:ADP1001 3.4 69.1 1.0 O1B B:ADP1001 3.4 55.9 1.0 O B:SER578 3.6 61.4 1.0 OD2 B:ASP418 3.7 56.0 1.0 OE2 B:GLU419 3.9 65.6 1.0 O1A B:ADP1001 4.0 69.5 1.0 N B:THR327 4.1 59.2 1.0 CG2 B:THR327 4.3 46.0 1.0 CA B:THR327 4.3 56.6 1.0 C B:SER578 4.4 60.8 1.0 O3A B:ADP1001 4.4 62.5 1.0 O B:THR577 4.4 62.0 1.0 O2B B:ADP1001 4.5 70.8 1.0 CD B:GLU419 4.5 63.6 1.0 PA B:ADP1001 4.5 61.4 1.0 CG B:ASP418 4.6 54.9 1.0 NE2 B:GLN350 4.6 45.0 1.0 OD1 B:ASP418 4.6 60.4 1.0 CG B:GLU419 4.6 45.2 1.0 O2A B:ADP1001 4.7 64.5 1.0 NZ B:LYS326 4.8 52.9 1.0 O B:HOH1120 4.8 41.0 1.0 CE B:LYS326 4.9 55.2 1.0 CA B:SER578 4.9 57.1 1.0 CB B:LYS326 4.9 54.5 1.0

F.Hamann, A.Schmitt, F.Favretto, R.Hofele, P.Neumann, S.Xiang, H.Urlaub, M.Zweckstetter, R.Ficner. Structural Analysis of the Intrinsically Disordered Splicing Factor SPP2 and Its Binding to the Deah-Box Atpase PRP2 Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1907960117