Magnesium in PDB 6rny: Pfv Intasome - Nucleosome Strand Transfer Complex

All present enzymatic activity of Pfv Intasome - Nucleosome Strand Transfer Complex:
2.7.7.49; 2.7.7.7; 3.1.26.4;

The binding sites of Magnesium atom in the Pfv Intasome - Nucleosome Strand Transfer Complex (pdb code 6rny). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pfv Intasome - Nucleosome Strand Transfer Complex, PDB code: 6rny:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Pfv Intasome - Nucleosome Strand Transfer Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pfv Intasome - Nucleosome Strand Transfer Complex within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg401 b:0.0 occ:1.00 OP2 J:DG37 1.8 0.0 1.0 O3' U:DG36 2.3 0.0 1.0 OD2 K:ASP128 2.5 0.0 1.0 OD1 K:ASP128 2.6 0.0 1.0 OD2 K:ASP185 2.7 0.0 1.0 P J:DG37 2.7 0.0 1.0 CG K:ASP128 2.9 0.0 1.0 OP1 J:DG37 2.9 0.0 1.0 C3' U:DG36 3.0 0.0 1.0 O3' J:DA36 3.6 0.0 1.0 CG K:ASP185 3.9 0.0 1.0 O5' J:DG37 4.0 0.0 1.0 C4' U:DG36 4.1 0.0 1.0 C2' U:DG36 4.2 0.0 1.0 OE2 K:GLU221 4.3 0.0 1.0 O K:TYR129 4.3 0.0 1.0 C5' J:DG37 4.3 0.0 1.0 CB K:ASP128 4.4 0.0 1.0 OD1 K:ASP185 4.6 0.0 1.0 CB K:ASP185 4.8 0.0 1.0 C5' U:DG36 4.9 0.0 1.0 C3' J:DA36 5.0 0.0 1.0

Magnesium binding site 2 out of 2 in the Pfv Intasome - Nucleosome Strand Transfer Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pfv Intasome - Nucleosome Strand Transfer Complex within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg401 b:0.0 occ:1.00 O3' T:DA-41 1.8 0.0 1.0 OP1 I:DC-40 1.9 0.0 1.0 OD2 O:ASP185 2.1 0.0 1.0 OD1 O:ASP128 2.6 0.0 1.0 C3' T:DA-41 2.7 0.0 1.0 P I:DC-40 3.0 0.0 1.0 CG O:ASP185 3.3 0.0 1.0 O5' I:DC-40 3.3 0.0 1.0 CG O:ASP128 3.4 0.0 1.0 OD2 O:ASP128 3.5 0.0 1.0 C4' T:DA-41 3.6 0.0 1.0 OP2 I:DC-40 3.7 0.0 1.0 OD1 O:ASP185 3.8 0.0 1.0 C2' T:DA-41 3.9 0.0 1.0 O3' I:DA-41 4.2 0.0 1.0 CB O:ASP185 4.5 0.0 1.0 C5' T:DA-41 4.5 0.0 1.0 O O:TYR129 4.6 0.0 1.0 C1' T:DA-41 4.7 0.0 1.0 C5' I:DC-40 4.7 0.0 1.0 O4' T:DA-41 4.8 0.0 1.0 O5' T:DA-41 4.8 0.0 1.0 CB O:ASP128 4.8 0.0 1.0

M.D.Wilson, L.Renault, D.P.Maskell, M.Ghoneim, V.E.Pye, A.Nans, D.S.Rueda, P.Cherepanov, A.Costa. Retroviral Integration Into Nucleosomes Through Dna Looping and Sliding Along the Histone Octamer. Nat Commun V. 10 4189 2019.
ISSN: ESSN 2041-1723
PubMed: 31519882
DOI: 10.1038/S41467-019-12007-W