Magnesium in PDB 6rup: Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence

The structure of Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence, PDB code: 6rup was solved by A.Tarres-Sole, A.Chakraborty, H.N.Spelbrink, C.Delettre, M.Sola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.58 / 2.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	51.040, 51.040, 182.340, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 24.9

The binding sites of Magnesium atom in the Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence (pdb code 6rup). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence, PDB code: 6rup:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:62.2 occ:0.58 OD2 B:ASP96 2.2 79.0 1.0 NH1 B:ARG95 2.3 67.5 1.0 CG B:ASP96 3.0 68.2 1.0 OD1 B:ASP96 3.2 76.5 1.0 CZ B:ARG95 3.3 82.7 1.0 N B:GLY93 3.6 60.0 1.0 CG B:ARG95 3.8 62.4 1.0 CD B:ARG95 3.9 68.3 1.0 NE B:ARG95 4.0 81.9 1.0 CA B:PRO92 4.1 69.0 1.0 NH2 B:ARG95 4.2 94.2 1.0 CB B:PRO92 4.4 73.5 1.0 C B:PRO92 4.4 67.0 1.0 CB B:ASP96 4.4 58.3 1.0 CA B:GLY93 4.6 59.8 1.0 N B:ASP96 4.8 51.1 1.0

Magnesium binding site 2 out of 2 in the Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Mitochondrial Single-Stranded Dna Binding Protein, SSBP1, at 2.1 A Resolution - Elucidated Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:92.2 occ:0.50 NE2 B:HIS34 2.3 62.5 1.0 CE1 B:HIS34 2.9 62.0 1.0 CD2 B:HIS34 3.5 62.2 1.0 ND1 A:HIS34 4.0 67.4 1.0 CE1 A:HIS34 4.1 67.2 1.0 ND1 B:HIS34 4.1 62.8 1.0 CG B:HIS34 4.4 58.7 1.0 CG B:ARG32 4.4 71.0 1.0 OE2 B:GLU111 4.5 61.3 1.0

C.Piro-Megy, E.Sarzi, A.Tarres-Sole, M.Pequignot, F.Hensen, M.Quiles, G.Manes, A.Chakraborty, A.Senechal, B.Bocquet, C.Cazevieille, A.Roubertie, A.Muller, M.Charif, D.Goudenege, G.Lenaers, H.Wilhelm, U.Kellner, N.Weisschuh, B.Wissinger, X.Zanlonghi, C.Hamel, J.N.Spelbrink, M.Sola, C.Delettre. Dominant Mutations in Mtdna Maintenance Gene SSBP1 Cause Optic Atrophy and Foveopathy. J.Clin.Invest. 2019.
ISSN: ISSN 0021-9738
PubMed: 31550237
DOI: 10.1172/JCI128513