Magnesium in PDB 6rvz: Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate

Protein crystallography data

The structure of Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate, PDB code: 6rvz was solved by A.Kroupova, M.Jinek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.04 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.653, 99.653, 94.155, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.1

Other elements in 6rvz:

The structure of Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate also contains other interesting chemical elements:

Potassium (K) 3 atoms
Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate (pdb code 6rvz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate, PDB code: 6rvz:

Magnesium binding site 1 out of 1 in 6rvz

Go back to Magnesium Binding Sites List in 6rvz
Magnesium binding site 1 out of 1 in the Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ANGEL2, A 2',3'-Cyclic Phosphatase, in Complex with Adenosine-2',3'-Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:25.6
occ:1.00
O A:HOH814 2.0 24.6 1.0
O3V A:KL2601 2.0 30.4 1.0
O A:HOH716 2.1 19.4 1.0
OE2 A:GLU220 2.1 25.5 1.0
O A:HOH754 2.2 20.1 1.0
O2' A:KL2601 2.2 30.6 1.0
HOV3 A:KL2601 2.3 30.0 0.0
V A:KL2601 3.0 30.8 1.0
CD A:GLU220 3.1 25.4 1.0
H4' A:KL2601 3.2 31.2 1.0
HE2 A:HIS533 3.3 25.1 0.0
H1' A:KL2601 3.3 31.6 1.0
HD21 A:ASN173 3.4 23.5 0.0
OE1 A:GLU220 3.4 25.0 1.0
C2' A:KL2601 3.5 31.4 1.0
HD13 A:LEU175 3.6 17.5 1.0
C1' A:KL2601 3.8 31.6 1.0
C4' A:KL2601 4.0 31.3 1.0
O3' A:KL2601 4.0 30.7 1.0
C3' A:KL2601 4.0 31.1 1.0
NE2 A:HIS533 4.1 26.1 1.0
HE1 A:HIS310 4.1 25.6 1.0
ND2 A:ASN173 4.1 23.4 1.0
O4' A:KL2601 4.2 31.3 1.0
O A:HOH752 4.2 18.4 1.0
O2V A:KL2601 4.2 31.4 1.0
O A:HOH787 4.2 26.6 1.0
OD2 A:ASP532 4.2 26.2 1.0
HD12 A:LEU175 4.3 17.5 1.0
H2' A:KL2601 4.3 31.2 1.0
OD1 A:ASN173 4.4 24.4 1.0
CD1 A:LEU175 4.4 17.6 1.0
HD2 A:HIS533 4.4 26.1 1.0
HD13 A:LEU179 4.4 28.6 1.0
O A:HOH791 4.4 33.5 1.0
OD1 A:ASP532 4.4 25.6 1.0
HA A:LEU175 4.5 17.0 1.0
CG A:GLU220 4.5 25.5 1.0
HG3 A:GLU220 4.6 25.5 1.0
HH A:TYR187 4.6 26.3 0.0
CD2 A:HIS533 4.6 26.1 1.0
CG A:ASN173 4.6 23.5 1.0
HD22 A:ASN173 4.7 23.5 0.0
O1V A:KL2601 4.7 30.4 1.0
HB3 A:LEU179 4.8 28.5 1.0
HD11 A:LEU175 4.8 17.5 1.0
CG A:ASP532 4.8 26.0 1.0
OH A:TYR187 4.8 28.8 1.0
HG2 A:GLU220 4.9 25.5 1.0
HD11 A:LEU179 4.9 28.6 1.0
CE1 A:HIS310 5.0 25.8 1.0

Reference:

P.Pinto, A.Kroupova, M.Jinek, S.Weitzer, J.Martinez. ANGEL2, A Member of the CCR4-Not Family of Deadenylases, Is A Mammalian 2,3-Cyclic Phosphatase. To Be Published.
Page generated: Tue Dec 15 00:02:00 2020

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