Magnesium in PDB 6rwo: Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
Other elements in 6rwo:
The structure of Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
(pdb code 6rwo). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir, PDB code: 6rwo:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 6rwo
Go back to
Magnesium Binding Sites List in 6rwo
Magnesium binding site 1 out
of 4 in the Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg304
b:26.2
occ:1.00
|
O
|
A:HOH401
|
2.0
|
24.4
|
1.0
|
O
|
A:HOH402
|
2.0
|
24.1
|
1.0
|
OAB
|
A:KLQ303
|
2.0
|
26.6
|
1.0
|
OAD
|
A:KLQ303
|
2.1
|
26.6
|
1.0
|
OD2
|
A:ASP116
|
2.1
|
23.4
|
1.0
|
OD1
|
A:ASP64
|
2.1
|
22.5
|
1.0
|
CAS
|
A:KLQ303
|
3.1
|
26.6
|
1.0
|
CG
|
A:ASP64
|
3.1
|
22.5
|
1.0
|
CG
|
A:ASP116
|
3.2
|
23.4
|
1.0
|
CAW
|
A:KLQ303
|
3.2
|
26.6
|
1.0
|
OD2
|
A:ASP64
|
3.4
|
22.5
|
1.0
|
MG
|
A:MG305
|
3.6
|
21.1
|
1.0
|
CAZ
|
A:KLQ303
|
3.6
|
26.6
|
1.0
|
OD1
|
A:ASP116
|
3.7
|
23.4
|
1.0
|
NBE
|
A:KLQ303
|
4.2
|
26.6
|
1.0
|
O
|
A:HOH403
|
4.4
|
22.7
|
1.0
|
O
|
A:CYS65
|
4.4
|
31.0
|
1.0
|
CB
|
A:ASP116
|
4.4
|
23.4
|
1.0
|
CBC
|
A:KLQ303
|
4.5
|
26.6
|
1.0
|
CBA
|
A:KLQ303
|
4.5
|
26.6
|
1.0
|
N
|
A:CYS65
|
4.5
|
31.0
|
1.0
|
CB
|
A:ASP64
|
4.5
|
22.5
|
1.0
|
OE2
|
A:GLU152
|
4.7
|
22.7
|
1.0
|
OAC
|
A:KLQ303
|
4.7
|
26.6
|
1.0
|
CA
|
A:ASP64
|
4.8
|
22.5
|
1.0
|
N7
|
T:DA21
|
4.9
|
30.9
|
1.0
|
NBF
|
A:KLQ303
|
5.0
|
26.6
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 6rwo
Go back to
Magnesium Binding Sites List in 6rwo
Magnesium binding site 2 out
of 4 in the Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg305
b:21.1
occ:1.00
|
OAC
|
A:KLQ303
|
2.0
|
26.6
|
1.0
|
O
|
A:HOH403
|
2.0
|
22.7
|
1.0
|
OE1
|
A:GLU152
|
2.0
|
22.7
|
1.0
|
OD2
|
A:ASP64
|
2.1
|
22.5
|
1.0
|
OE2
|
A:GLU152
|
2.1
|
22.7
|
1.0
|
OAD
|
A:KLQ303
|
2.1
|
26.6
|
1.0
|
CD
|
A:GLU152
|
2.3
|
22.7
|
1.0
|
CBA
|
A:KLQ303
|
2.7
|
26.6
|
1.0
|
CAW
|
A:KLQ303
|
2.8
|
26.6
|
1.0
|
CG
|
A:ASP64
|
3.1
|
22.5
|
1.0
|
OD1
|
A:ASP64
|
3.5
|
22.5
|
1.0
|
MG
|
A:MG304
|
3.6
|
26.2
|
1.0
|
CG
|
A:GLU152
|
3.9
|
22.7
|
1.0
|
O
|
A:HOH401
|
4.1
|
24.4
|
1.0
|
CAZ
|
A:KLQ303
|
4.1
|
26.6
|
1.0
|
CAX
|
A:KLQ303
|
4.1
|
26.6
|
1.0
|
ND2
|
A:ASN155
|
4.4
|
21.7
|
1.0
|
CB
|
A:ASP64
|
4.4
|
22.5
|
1.0
|
OAB
|
A:KLQ303
|
4.6
|
26.6
|
1.0
|
NAP
|
A:KLQ303
|
4.7
|
26.6
|
1.0
|
O
|
A:CYS65
|
4.7
|
31.0
|
1.0
|
FAG
|
A:KLQ303
|
4.7
|
26.6
|
1.0
|
CB
|
A:GLU152
|
4.7
|
22.7
|
1.0
|
NE2
|
A:HIS148
|
4.8
|
21.9
|
1.0
|
OD2
|
A:ASP116
|
4.8
|
23.4
|
1.0
|
CAS
|
A:KLQ303
|
4.9
|
26.6
|
1.0
|
CAR
|
A:KLQ303
|
4.9
|
26.6
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 6rwo
Go back to
Magnesium Binding Sites List in 6rwo
Magnesium binding site 3 out
of 4 in the Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg304
b:26.2
occ:1.00
|
O
|
I:HOH401
|
2.0
|
23.8
|
1.0
|
O
|
I:HOH402
|
2.0
|
24.0
|
1.0
|
OAB
|
I:KLQ303
|
2.0
|
25.3
|
1.0
|
OAD
|
I:KLQ303
|
2.1
|
25.3
|
1.0
|
OD2
|
I:ASP116
|
2.1
|
23.8
|
1.0
|
OD1
|
I:ASP64
|
2.1
|
22.6
|
1.0
|
CAS
|
I:KLQ303
|
3.1
|
25.3
|
1.0
|
CG
|
I:ASP64
|
3.1
|
22.6
|
1.0
|
CG
|
I:ASP116
|
3.2
|
23.8
|
1.0
|
CAW
|
I:KLQ303
|
3.2
|
25.3
|
1.0
|
OD2
|
I:ASP64
|
3.4
|
22.6
|
1.0
|
MG
|
I:MG305
|
3.6
|
20.9
|
1.0
|
CAZ
|
I:KLQ303
|
3.6
|
25.3
|
1.0
|
OD1
|
I:ASP116
|
3.7
|
23.8
|
1.0
|
NBE
|
I:KLQ303
|
4.2
|
25.3
|
1.0
|
O
|
I:HOH403
|
4.2
|
22.4
|
1.0
|
O
|
I:CYS65
|
4.4
|
30.4
|
1.0
|
CB
|
I:ASP116
|
4.4
|
23.8
|
1.0
|
CBA
|
I:KLQ303
|
4.5
|
25.3
|
1.0
|
N
|
I:CYS65
|
4.5
|
30.4
|
1.0
|
CBC
|
I:KLQ303
|
4.5
|
25.3
|
1.0
|
CB
|
I:ASP64
|
4.5
|
22.6
|
1.0
|
OAC
|
I:KLQ303
|
4.7
|
25.3
|
1.0
|
OE2
|
I:GLU152
|
4.7
|
21.6
|
1.0
|
N7
|
W:DA21
|
4.8
|
30.7
|
1.0
|
CA
|
I:ASP64
|
4.8
|
22.6
|
1.0
|
NBF
|
I:KLQ303
|
5.0
|
25.3
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 6rwo
Go back to
Magnesium Binding Sites List in 6rwo
Magnesium binding site 4 out
of 4 in the Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Sivrcm Intasome (Q148/G140S) in Complex with Bictegravir within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg305
b:20.9
occ:1.00
|
OAC
|
I:KLQ303
|
2.0
|
25.3
|
1.0
|
O
|
I:HOH403
|
2.0
|
22.4
|
1.0
|
OE2
|
I:GLU152
|
2.0
|
21.6
|
1.0
|
OD2
|
I:ASP64
|
2.1
|
22.6
|
1.0
|
OE1
|
I:GLU152
|
2.1
|
21.6
|
1.0
|
OAD
|
I:KLQ303
|
2.1
|
25.3
|
1.0
|
CD
|
I:GLU152
|
2.4
|
21.6
|
1.0
|
CBA
|
I:KLQ303
|
2.7
|
25.3
|
1.0
|
CAW
|
I:KLQ303
|
2.8
|
25.3
|
1.0
|
CG
|
I:ASP64
|
3.1
|
22.6
|
1.0
|
OD1
|
I:ASP64
|
3.5
|
22.6
|
1.0
|
MG
|
I:MG304
|
3.6
|
26.2
|
1.0
|
CG
|
I:GLU152
|
3.9
|
21.6
|
1.0
|
CAZ
|
I:KLQ303
|
4.1
|
25.3
|
1.0
|
O
|
I:HOH401
|
4.1
|
23.8
|
1.0
|
CAX
|
I:KLQ303
|
4.2
|
25.3
|
1.0
|
CB
|
I:ASP64
|
4.4
|
22.6
|
1.0
|
ND2
|
I:ASN155
|
4.4
|
21.8
|
1.0
|
OAB
|
I:KLQ303
|
4.6
|
25.3
|
1.0
|
NAP
|
I:KLQ303
|
4.7
|
25.3
|
1.0
|
FAG
|
I:KLQ303
|
4.7
|
25.3
|
1.0
|
O
|
I:CYS65
|
4.7
|
30.4
|
1.0
|
NE2
|
I:HIS148
|
4.7
|
21.4
|
1.0
|
OD2
|
I:ASP116
|
4.8
|
23.8
|
1.0
|
CB
|
I:GLU152
|
4.8
|
21.6
|
1.0
|
CAS
|
I:KLQ303
|
4.9
|
25.3
|
1.0
|
CAR
|
I:KLQ303
|
4.9
|
25.3
|
1.0
|
|
Reference:
P.Cherepanov,
N.Nans,
N.J.Cook.
Structural Basis of Second-Generation Hiv Integrase Inhibitor Action and Viral Resistance Science 2020.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.AAY4919
Page generated: Tue Oct 1 17:33:33 2024
|