Magnesium in PDB 6ryd: Wus-Hd Bound to Tgaa Dna

The structure of Wus-Hd Bound to Tgaa Dna, PDB code: 6ryd was solved by J.J.Sloan, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.38 / 1.58
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.740, 54.340, 75.560, 90.00, 107.54, 90.00
R / Rfree (%)	18.7 / 22.7

The binding sites of Magnesium atom in the Wus-Hd Bound to Tgaa Dna (pdb code 6ryd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Wus-Hd Bound to Tgaa Dna, PDB code: 6ryd:

Magnesium binding site 1 out of 1 in the Wus-Hd Bound to Tgaa Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wus-Hd Bound to Tgaa Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:58.0 occ:1.00 OP2 D:DT16 2.2 55.0 1.0 O D:HOH224 2.7 48.3 1.0 P D:DT16 3.2 56.7 1.0 C2' D:DC15 3.2 50.9 1.0 O5' D:DT16 3.3 53.5 1.0 C3' D:DC15 3.3 52.9 1.0 O3' D:DC15 3.7 54.4 1.0 C6 D:DT16 3.7 38.7 1.0 C7 D:DT16 3.8 41.0 1.0 C5 D:DT16 4.1 38.4 1.0 C2' D:DT16 4.3 45.1 1.0 C5' D:DT16 4.5 49.9 1.0 OP1 D:DT16 4.5 61.3 1.0 N1 D:DT16 4.7 38.2 1.0 C1' D:DC15 4.7 48.2 1.0 O4' D:DT16 4.7 42.3 1.0 C4' D:DC15 4.8 53.4 1.0 C1' D:DT16 4.8 42.0 1.0 C3' D:DT16 4.8 45.7 1.0 C4' D:DT16 5.0 45.4 1.0

J.J.Sloan, J.P.Hakenjos, M.Gebert, A.Gumiero, G.Stier, K.Wild, I.Sinning, J.U.Lohmann. Structural Basis For the Complex Dna Binding Behavior of the Plant Stem Cell Regulator Wuschel Nat Commun 2020.
ISSN: ESSN 2041-1723