Atomistry » Magnesium » PDB 6rux-6s40 » 6ryd
Atomistry »
  Magnesium »
    PDB 6rux-6s40 »
      6ryd »

Magnesium in PDB 6ryd: Wus-Hd Bound to Tgaa Dna

Protein crystallography data

The structure of Wus-Hd Bound to Tgaa Dna, PDB code: 6ryd was solved by J.J.Sloan, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.38 / 1.58
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.740, 54.340, 75.560, 90.00, 107.54, 90.00
R / Rfree (%) 18.7 / 22.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Wus-Hd Bound to Tgaa Dna (pdb code 6ryd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Wus-Hd Bound to Tgaa Dna, PDB code: 6ryd:

Magnesium binding site 1 out of 1 in 6ryd

Go back to Magnesium Binding Sites List in 6ryd
Magnesium binding site 1 out of 1 in the Wus-Hd Bound to Tgaa Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wus-Hd Bound to Tgaa Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg101

b:58.0
occ:1.00
OP2 D:DT16 2.2 55.0 1.0
O D:HOH224 2.7 48.3 1.0
P D:DT16 3.2 56.7 1.0
C2' D:DC15 3.2 50.9 1.0
O5' D:DT16 3.3 53.5 1.0
C3' D:DC15 3.3 52.9 1.0
O3' D:DC15 3.7 54.4 1.0
C6 D:DT16 3.7 38.7 1.0
C7 D:DT16 3.8 41.0 1.0
C5 D:DT16 4.1 38.4 1.0
C2' D:DT16 4.3 45.1 1.0
C5' D:DT16 4.5 49.9 1.0
OP1 D:DT16 4.5 61.3 1.0
N1 D:DT16 4.7 38.2 1.0
C1' D:DC15 4.7 48.2 1.0
O4' D:DT16 4.7 42.3 1.0
C4' D:DC15 4.8 53.4 1.0
C1' D:DT16 4.8 42.0 1.0
C3' D:DT16 4.8 45.7 1.0
C4' D:DT16 5.0 45.4 1.0

Reference:

J.J.Sloan, J.P.Hakenjos, M.Gebert, A.Gumiero, G.Stier, K.Wild, I.Sinning, J.U.Lohmann. Structural Basis For the Complex Dna Binding Behavior of the Plant Stem Cell Regulator Wuschel Nat Commun 2020.
ISSN: ESSN 2041-1723
Page generated: Tue Oct 1 17:34:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy