Magnesium in PDB 6ryu: Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)

Enzymatic activity of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)

All present enzymatic activity of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies):
3.6.4.12;

Other elements in 6ryu:

The structure of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) (pdb code 6ryu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies), PDB code: 6ryu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6ryu

Go back to Magnesium Binding Sites List in 6ryu
Magnesium binding site 1 out of 2 in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg2202

b:92.7
occ:1.00
O2B W:ANP2201 2.3 0.8 1.0
O1B W:ANP2201 2.5 0.8 1.0
PB W:ANP2201 2.5 0.8 1.0
N3B W:ANP2201 2.7 0.8 1.0
OD2 W:ASP873 2.8 76.0 1.0
O2G W:ANP2201 3.2 0.8 1.0
OE2 W:GLU874 3.3 82.6 1.0
PG W:ANP2201 3.5 0.8 1.0
CG W:ASP873 3.9 76.0 1.0
OG1 W:THR758 4.0 78.4 1.0
O3A W:ANP2201 4.1 0.8 1.0
O3G W:ANP2201 4.2 0.8 1.0
CD W:GLU874 4.2 82.6 1.0
OD1 W:ASP873 4.3 76.0 1.0
OE1 W:GLU874 4.3 82.6 1.0
CA W:GLY1132 4.4 89.0 1.0
CE W:LYS757 4.6 85.9 1.0
O1A W:ANP2201 4.6 0.8 1.0
CD W:LYS757 4.7 85.9 1.0
O W:GLY1132 4.8 89.0 1.0
O1G W:ANP2201 4.8 0.8 1.0
NZ W:LYS757 4.9 85.9 1.0
O W:LEU1131 5.0 81.6 1.0
CG W:LYS757 5.0 85.9 1.0

Magnesium binding site 2 out of 2 in 6ryu

Go back to Magnesium Binding Sites List in 6ryu
Magnesium binding site 2 out of 2 in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg2202

b:0.6
occ:1.00
O2B V:ANP2201 2.3 0.8 1.0
O1B V:ANP2201 2.5 0.8 1.0
PB V:ANP2201 2.5 0.8 1.0
N3B V:ANP2201 2.7 0.8 1.0
OD2 V:ASP873 2.8 0.8 1.0
O2G V:ANP2201 3.2 0.8 1.0
OE2 V:GLU874 3.3 0.0 1.0
PG V:ANP2201 3.5 0.8 1.0
CG V:ASP873 3.9 0.8 1.0
OG1 V:THR758 4.0 1.0 1.0
O3A V:ANP2201 4.1 0.8 1.0
O3G V:ANP2201 4.2 0.8 1.0
CD V:GLU874 4.2 0.0 1.0
OD1 V:ASP873 4.3 0.8 1.0
OE1 V:GLU874 4.3 0.0 1.0
CA V:GLY1132 4.4 0.8 1.0
CE V:LYS757 4.6 0.1 1.0
O1A V:ANP2201 4.6 0.8 1.0
CD V:LYS757 4.7 0.1 1.0
O V:GLY1132 4.8 0.8 1.0
O1G V:ANP2201 4.8 0.8 1.0
NZ V:LYS757 4.9 0.1 1.0
O V:LEU1131 5.0 0.8 1.0
CG V:LYS757 5.0 0.1 1.0

Reference:

L.Farnung, M.Ochmann, P.Cramer. Nucleosome-CHD4 Chromatin Remodeller Structure Maps Human Disease Mutations. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32543371
DOI: 10.7554/ELIFE.56178
Page generated: Mon Jan 25 15:11:51 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy