Magnesium in PDB 6ryu: Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)

All present enzymatic activity of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies):
3.6.4.12;

The structure of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Magnesium atom in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) (pdb code 6ryu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies), PDB code: 6ryu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg2202 b:92.7 occ:1.00 O2B W:ANP2201 2.3 0.8 1.0 O1B W:ANP2201 2.5 0.8 1.0 PB W:ANP2201 2.5 0.8 1.0 N3B W:ANP2201 2.7 0.8 1.0 OD2 W:ASP873 2.8 76.0 1.0 O2G W:ANP2201 3.2 0.8 1.0 OE2 W:GLU874 3.3 82.6 1.0 PG W:ANP2201 3.5 0.8 1.0 CG W:ASP873 3.9 76.0 1.0 OG1 W:THR758 4.0 78.4 1.0 O3A W:ANP2201 4.1 0.8 1.0 O3G W:ANP2201 4.2 0.8 1.0 CD W:GLU874 4.2 82.6 1.0 OD1 W:ASP873 4.3 76.0 1.0 OE1 W:GLU874 4.3 82.6 1.0 CA W:GLY1132 4.4 89.0 1.0 CE W:LYS757 4.6 85.9 1.0 O1A W:ANP2201 4.6 0.8 1.0 CD W:LYS757 4.7 85.9 1.0 O W:GLY1132 4.8 89.0 1.0 O1G W:ANP2201 4.8 0.8 1.0 NZ W:LYS757 4.9 85.9 1.0 O W:LEU1131 5.0 81.6 1.0 CG W:LYS757 5.0 85.9 1.0

Magnesium binding site 2 out of 2 in the Nucleosome-CHD4 Complex Structure (Two CHD4 Copies)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nucleosome-CHD4 Complex Structure (Two CHD4 Copies) within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg2202 b:0.6 occ:1.00 O2B V:ANP2201 2.3 0.8 1.0 O1B V:ANP2201 2.5 0.8 1.0 PB V:ANP2201 2.5 0.8 1.0 N3B V:ANP2201 2.7 0.8 1.0 OD2 V:ASP873 2.8 0.8 1.0 O2G V:ANP2201 3.2 0.8 1.0 OE2 V:GLU874 3.3 0.0 1.0 PG V:ANP2201 3.5 0.8 1.0 CG V:ASP873 3.9 0.8 1.0 OG1 V:THR758 4.0 1.0 1.0 O3A V:ANP2201 4.1 0.8 1.0 O3G V:ANP2201 4.2 0.8 1.0 CD V:GLU874 4.2 0.0 1.0 OD1 V:ASP873 4.3 0.8 1.0 OE1 V:GLU874 4.3 0.0 1.0 CA V:GLY1132 4.4 0.8 1.0 CE V:LYS757 4.6 0.1 1.0 O1A V:ANP2201 4.6 0.8 1.0 CD V:LYS757 4.7 0.1 1.0 O V:GLY1132 4.8 0.8 1.0 O1G V:ANP2201 4.8 0.8 1.0 NZ V:LYS757 4.9 0.1 1.0 O V:LEU1131 5.0 0.8 1.0 CG V:LYS757 5.0 0.1 1.0

L.Farnung, M.Ochmann, P.Cramer. Nucleosome-CHD4 Chromatin Remodeller Structure Maps Human Disease Mutations. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32543371
DOI: 10.7554/ELIFE.56178