Atomistry » Magnesium » PDB 6rux-6s40 » 6s02
Atomistry »
  Magnesium »
    PDB 6rux-6s40 »
      6s02 »

Magnesium in PDB 6s02: Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State

Protein crystallography data

The structure of Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State, PDB code: 6s02 was solved by I.Vakonakis, J.Day, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.51 / 1.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.115, 101.796, 103.310, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State (pdb code 6s02). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State, PDB code: 6s02:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6s02

Go back to Magnesium Binding Sites List in 6s02
Magnesium binding site 1 out of 2 in the Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg451

b:49.1
occ:1.00
O1B A:ADP450 2.3 50.4 1.0
O A:HOH599 2.4 27.4 1.0
O A:TYR44 2.4 24.4 1.0
HA3 A:GLY41 2.8 31.8 1.0
OD2 A:ASP39 2.9 28.8 1.0
O A:HOH525 2.9 42.3 1.0
O3B A:ADP450 3.2 40.5 1.0
PB A:ADP450 3.2 41.8 1.0
O A:HOH538 3.5 45.3 1.0
C A:TYR44 3.5 25.1 1.0
O2A A:ADP450 3.6 31.8 1.0
HB2 A:TYR44 3.7 32.3 1.0
CA A:GLY41 3.7 26.5 1.0
CG A:ASP39 3.7 28.7 1.0
H A:TYR44 3.8 30.8 1.0
O1A A:ADP450 3.9 36.6 1.0
HA2 A:GLY41 3.9 31.8 1.0
PA A:ADP450 3.9 28.7 1.0
HA A:SER45 4.0 33.2 1.0
O3A A:ADP450 4.0 41.9 1.0
OD1 A:ASP39 4.0 30.0 1.0
O A:HOH585 4.1 42.5 1.0
H A:GLY41 4.3 30.1 1.0
CA A:TYR44 4.3 26.1 1.0
CB A:TYR44 4.3 26.9 1.0
N A:TYR44 4.4 25.6 1.0
N A:GLY41 4.4 25.0 1.0
N A:SER45 4.5 27.8 1.0
HB3 A:TYR44 4.5 32.3 1.0
O2B A:ADP450 4.5 46.8 1.0
CA A:SER45 4.6 27.6 1.0
H A:THR42 4.7 31.8 1.0
C A:GLY41 4.7 26.4 1.0
O A:ASP397 4.7 24.0 1.0
HB2 A:ASP397 4.8 34.8 1.0
O A:HOH561 4.8 21.2 1.0
H A:THR43 4.9 29.4 1.0
HB3 A:ASP39 4.9 31.3 1.0
HB2 A:CYS46 4.9 31.6 1.0
N A:THR42 5.0 26.4 1.0
CB A:ASP39 5.0 26.1 1.0

Magnesium binding site 2 out of 2 in 6s02

Go back to Magnesium Binding Sites List in 6s02
Magnesium binding site 2 out of 2 in the Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Plasmodium Falciparum HSP70-X Chaperone Nucleotide Binding Domain - Adp Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg452

b:59.9
occ:1.00
OD2 B:ASP39 2.8 34.3 1.0
O3B B:ADP450 3.0 48.1 1.0
HA3 B:GLY41 3.0 37.0 1.0
O2B B:ADP450 3.1 48.8 1.0
O B:HOH533 3.1 36.8 1.0
O B:TYR44 3.1 31.1 1.0
PB B:ADP450 3.4 48.4 1.0
O1A B:ADP450 3.5 50.2 1.0
CG B:ASP39 3.6 34.0 1.0
OD1 B:ASP39 3.8 33.8 1.0
HA2 B:GLY41 3.8 37.0 1.0
CA B:GLY41 3.9 30.8 1.0
PA B:ADP450 3.9 45.3 1.0
O3A B:ADP450 4.0 50.4 1.0
O2A B:ADP450 4.0 46.3 1.0
H B:TYR44 4.2 39.9 1.0
HB2 B:TYR44 4.2 42.9 1.0
O B:HOH586 4.2 36.5 1.0
C B:TYR44 4.3 31.7 1.0
H B:THR42 4.4 38.8 1.0
HA B:SER45 4.5 34.1 1.0
N B:GLY41 4.7 28.6 1.0
H B:GLY41 4.7 34.4 1.0
HB3 B:ASP39 4.8 38.2 1.0
C B:GLY41 4.8 30.2 1.0
O B:HOH569 4.8 32.4 1.0
CB B:ASP39 4.9 31.8 1.0
O B:ASP397 4.9 36.8 1.0
HA B:ASP397 4.9 47.1 1.0
N B:THR42 4.9 32.3 1.0
O1B B:ADP450 4.9 51.3 1.0
N B:TYR44 4.9 33.2 1.0
CB B:TYR44 5.0 35.7 1.0
CA B:TYR44 5.0 33.0 1.0

Reference:

J.Day, A.Passecker, H.P.Beck, I.Vakonakis. Theplasmodium FALCIPARUMHSP70-X Chaperone Assists the Heat Stress Response of the Malaria Parasite. Faseb J. 1741R 2019.
ISSN: ESSN 1530-6860
PubMed: 31690116
DOI: 10.1096/FJ.201901741R
Page generated: Tue Oct 1 17:35:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy