Magnesium in PDB 6s06: Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26

Enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26

All present enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26:
3.8.1.5;

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26, PDB code: 6s06 was solved by I.Iermak, J.R.Mesters, O.Degtjarik, R.Chaloupkova, I.Kuta Smatanova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.724, 68.709, 80.614, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 6s06:

The structure of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 (pdb code 6s06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26, PDB code: 6s06:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 1 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:13.2
occ:1.00
 O A:HOH541 2.1 13.5 1.0
OE1 A:GLU161 4.2 21.7 1.0
OE2 A:GLU161 4.3 21.4 1.0
O A:HOH723 4.3 45.8 1.0
CD A:GLU161 4.7 15.7 1.0

Magnesium binding site 2 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 2 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:22.1
occ:1.00
 O A:HOH536 2.0 18.1 1.0
O A:HOH512 2.2 18.6 1.0
O A:HOH510 2.3 27.6 1.0
O A:HOH571 4.2 13.4 1.0
OD2 A:ASP70 4.2 13.1 1.0
O A:HOH630 4.2 17.4 1.0
OE2 A:GLU15 4.3 26.1 1.0
OE1 A:GLU15 4.3 25.9 1.0
O A:GLY18 4.4 13.3 1.0
CD A:GLU15 4.7 19.2 1.0
N A:ARG20 4.9 12.3 1.0
CB A:ARG20 4.9 13.7 1.0

Magnesium binding site 3 out of 3 in 6s06

Go back to Magnesium Binding Sites List in 6s06
Magnesium binding site 3 out of 3 in the Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Haloalkane Dehalogenase Linb D147C+L177C Mutant (LINB73) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:25.8
occ:1.00
 O A:HOH520 2.0 26.2 1.0
O A:HOH688 2.1 50.5 1.0
O A:HOH700 2.2 34.8 1.0
OE1 A:GLU26 4.2 20.2 1.0
OE1 A:GLU10 4.3 20.3 0.5
O A:HOH558 4.3 48.1 1.0
CG A:GLU10 4.9 22.2 1.0

Reference:

P.Havlickova, I.Iermak, O.Degtjarik, T.Prudnikova, J.R.Mesters, R.Chaloupkova, J.Damborsky, M.Kuty, I.Kuta Smatanova. Computational and Experimental Design of Transport Tunnel in Hld LINB73 From Sphingobium Japonicum UT26 To Be Published.
Page generated: Mon Jan 25 15:11:49 2021

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