Magnesium in PDB 6s3t: P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae

The structure of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae, PDB code: 6s3t was solved by A.Guasch, I.Fita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.30 / 3.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	261.981, 185.010, 197.122, 90.00, 134.43, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Magnesium atom in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae (pdb code 6s3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae, PDB code: 6s3t:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:68.8 occ:1.00 O A:ILE315 2.0 74.9 1.0 OD1 A:ASN336 2.1 67.3 1.0 O A:THR312 2.2 74.3 1.0 O A:ASP334 2.6 73.7 1.0 O A:GLY333 2.8 74.5 1.0 CG A:ASN336 3.0 70.0 1.0 C A:ILE315 3.3 75.3 1.0 ND2 A:ASN336 3.3 70.3 1.0 C A:THR312 3.4 77.0 1.0 C A:ASP334 3.5 75.4 1.0 O A:GLN313 3.6 77.3 1.0 C A:GLN313 3.8 76.9 1.0 CA A:GLN313 3.8 75.9 1.0 C A:GLY333 4.0 74.2 1.0 N A:GLN313 4.0 75.9 1.0 CG2 A:VAL317 4.1 78.7 1.0 CA A:ASP334 4.1 77.5 1.0 N A:PHE316 4.1 72.1 1.0 N A:VAL317 4.1 75.8 1.0 CA A:PHE316 4.2 71.5 1.0 N A:ILE315 4.2 78.7 1.0 CA A:ILE315 4.3 77.1 1.0 CB A:ASN336 4.4 72.1 1.0 N A:GLN335 4.4 73.3 1.0 C A:GLN335 4.4 71.6 1.0 N A:ASP334 4.5 75.4 1.0 N A:LYS314 4.5 79.3 1.0 N A:ASN336 4.6 73.1 1.0 CA A:THR312 4.6 78.0 1.0 C A:PHE316 4.6 73.8 1.0 O A:GLN335 4.6 69.5 1.0 CA A:GLN335 4.7 72.3 1.0 CB A:ILE315 4.7 78.0 1.0 CG1 A:VAL317 4.8 79.3 1.0 CB A:VAL317 4.9 78.0 1.0 CA A:ASN336 4.9 74.2 1.0 C A:LYS314 4.9 80.5 1.0

Magnesium binding site 2 out of 4 in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:90.5 occ:1.00 O B:ILE315 2.0 89.8 1.0 OD1 B:ASN336 2.1 91.6 1.0 O B:THR312 2.2 90.8 1.0 O B:ASP334 2.6 91.9 1.0 O B:GLY333 2.8 85.5 1.0 CG B:ASN336 3.0 93.2 1.0 C B:ILE315 3.3 88.8 1.0 ND2 B:ASN336 3.4 93.1 1.0 C B:THR312 3.4 89.7 1.0 C B:ASP334 3.5 93.7 1.0 O B:GLN313 3.6 92.2 1.0 C B:GLN313 3.8 90.4 1.0 CA B:GLN313 3.8 89.9 1.0 C B:GLY333 3.9 86.3 1.0 N B:GLN313 4.0 89.3 1.0 CA B:ASP334 4.1 93.6 1.0 N B:PHE316 4.1 87.1 1.0 N B:VAL317 4.1 83.3 1.0 CA B:PHE316 4.2 86.3 1.0 N B:ILE315 4.2 90.6 1.0 CA B:ILE315 4.3 90.5 1.0 N B:GLN335 4.4 94.2 1.0 C B:GLN335 4.4 94.1 1.0 CB B:ASN336 4.4 94.1 1.0 N B:ASP334 4.5 90.7 1.0 N B:LYS314 4.5 90.5 1.0 CG2 B:VAL317 4.6 85.7 1.0 N B:ASN336 4.6 94.6 1.0 CA B:THR312 4.6 89.3 1.0 C B:PHE316 4.6 84.2 1.0 O B:GLN335 4.6 94.3 1.0 CA B:GLN335 4.6 94.0 1.0 CB B:ILE315 4.7 92.2 1.0 CB B:VAL317 4.9 84.9 1.0 CA B:ASN336 4.9 95.6 1.0 C B:LYS314 4.9 91.2 1.0

Magnesium binding site 3 out of 4 in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg502 b:0.9 occ:1.00 O S:ILE315 2.1 99.5 1.0 OD1 S:ASN336 2.1 1.0 1.0 O S:THR312 2.3 0.2 1.0 O S:ASP334 2.6 0.7 1.0 O S:GLY333 2.7 0.7 1.0 CG S:ASN336 3.0 0.3 1.0 ND2 S:ASN336 3.3 0.3 1.0 C S:ILE315 3.3 96.0 1.0 C S:THR312 3.4 0.8 1.0 C S:ASP334 3.5 0.2 1.0 O S:GLN313 3.6 0.7 1.0 C S:GLN313 3.7 0.2 1.0 CA S:GLN313 3.7 0.4 1.0 C S:GLY333 3.9 100.0 1.0 N S:GLN313 4.0 0.3 1.0 CA S:ASP334 4.1 0.3 1.0 N S:PHE316 4.2 93.8 1.0 N S:VAL317 4.2 97.4 1.0 CA S:PHE316 4.2 93.5 1.0 N S:ILE315 4.3 99.9 1.0 CA S:ILE315 4.3 97.1 1.0 N S:GLN335 4.4 0.5 1.0 N S:ASP334 4.4 0.6 1.0 C S:GLN335 4.4 99.5 1.0 CB S:ASN336 4.4 0.7 1.0 N S:LYS314 4.5 0.6 1.0 O S:GLN335 4.6 99.9 1.0 N S:ASN336 4.6 0.0 1.0 CA S:THR312 4.6 0.5 1.0 CA S:GLN335 4.7 99.2 1.0 CG2 S:VAL317 4.7 98.3 1.0 C S:PHE316 4.7 96.2 1.0 CB S:ILE315 4.8 96.5 1.0 CA S:ASN336 4.9 0.7 1.0 C S:LYS314 4.9 0.9 1.0 CB S:VAL317 5.0 99.0 1.0

Magnesium binding site 4 out of 4 in the P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg502 b:0.8 occ:1.00 O T:ILE315 2.0 0.3 1.0 OD1 T:ASN336 2.1 0.9 1.0 O T:THR312 2.2 0.1 1.0 O T:ASP334 2.6 0.1 1.0 O T:GLY333 2.8 0.4 1.0 CG T:ASN336 3.0 0.5 1.0 C T:ILE315 3.3 0.1 1.0 ND2 T:ASN336 3.4 0.4 1.0 C T:THR312 3.4 0.5 1.0 C T:ASP334 3.5 0.2 1.0 O T:GLN313 3.7 0.2 1.0 C T:GLN313 3.8 0.0 1.0 CA T:GLN313 3.8 0.2 1.0 C T:GLY333 4.0 0.6 1.0 N T:GLN313 4.0 0.0 1.0 CA T:ASP334 4.1 0.5 1.0 N T:VAL317 4.1 0.8 1.0 N T:PHE316 4.1 0.6 1.0 CA T:PHE316 4.1 0.7 1.0 N T:ILE315 4.2 0.6 1.0 CA T:ILE315 4.3 0.2 1.0 N T:GLN335 4.4 99.7 1.0 C T:GLN335 4.4 0.9 1.0 CB T:ASN336 4.4 0.8 1.0 N T:ASP334 4.5 0.9 1.0 CG2 T:VAL317 4.5 0.2 1.0 N T:LYS314 4.6 0.5 1.0 N T:ASN336 4.6 0.3 1.0 CA T:THR312 4.6 0.0 1.0 C T:PHE316 4.6 1.0 1.0 O T:GLN335 4.6 0.3 1.0 CA T:GLN335 4.6 99.5 1.0 CB T:ILE315 4.7 0.7 1.0 CB T:VAL317 4.8 0.2 1.0 CA T:ASN336 4.9 0.4 1.0 C T:LYS314 4.9 0.4 1.0

A.Guasch, I.Fita. Structure of P46, An Immunodominant Surface Protein From Mycoplasma Hyopneumoniae: Interaction with A Monoclonal Antibody To Be Published.