Magnesium in PDB 6s5f: Structure of the Human RAB39B in Complex with Gmppnp

The structure of Structure of the Human RAB39B in Complex with Gmppnp, PDB code: 6s5f was solved by L.Diaz-Saez, S.Jung, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, K.Huber, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.28 / 1.70
Space group	P 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	52.725, 35.285, 53.605, 90.00, 107.51, 90.00
R / Rfree (%)	18.4 / 22.9

The binding sites of Magnesium atom in the Structure of the Human RAB39B in Complex with Gmppnp (pdb code 6s5f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Human RAB39B in Complex with Gmppnp, PDB code: 6s5f:

Magnesium binding site 1 out of 1 in the Structure of the Human RAB39B in Complex with Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Human RAB39B in Complex with Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:17.0 occ:1.00 O2G A:GNP302 2.0 18.1 1.0 OG1 A:THR40 2.1 17.2 1.0 O1B A:GNP302 2.1 14.9 1.0 O A:HOH442 2.1 20.0 1.0 O A:HOH416 2.1 17.3 1.0 OG A:SER22 2.1 19.4 1.0 CB A:THR40 3.1 19.4 1.0 CB A:SER22 3.2 17.5 1.0 PG A:GNP302 3.2 17.9 1.0 PB A:GNP302 3.3 18.4 1.0 N3B A:GNP302 3.4 17.5 1.0 N A:THR40 3.6 23.2 1.0 O3G A:GNP302 3.9 17.1 1.0 CA A:THR40 3.9 23.9 1.0 N A:SER22 4.0 16.8 1.0 O A:HOH414 4.0 32.4 1.0 OD2 A:ASP64 4.1 18.1 1.0 OD1 A:ASP64 4.1 17.0 1.0 CA A:SER22 4.1 19.1 1.0 O1A A:GNP302 4.2 19.5 1.0 O3A A:GNP302 4.2 17.3 1.0 CG2 A:THR40 4.2 21.0 1.0 O2B A:GNP302 4.3 17.6 1.0 O1G A:GNP302 4.4 19.1 1.0 O A:ASP38 4.5 29.4 1.0 CG A:ASP64 4.5 18.8 1.0 O A:THR65 4.5 18.4 1.0 PA A:GNP302 4.6 18.6 1.0 C A:PRO39 4.7 28.7 1.0 O2A A:GNP302 4.7 16.4 1.0 CA A:PRO39 4.9 26.8 1.0 CB A:LYS21 4.9 16.7 1.0

L.Diaz-Saez, S.Jung, K.Huber, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra. Structure of the Human RAB39B in Complex with Gmppnp To Be Published.