Magnesium in PDB 6s6z: Structure of Beta-Galactosidase From Thermotoga Maritima
Enzymatic activity of Structure of Beta-Galactosidase From Thermotoga Maritima
All present enzymatic activity of Structure of Beta-Galactosidase From Thermotoga Maritima:
3.2.1.23;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Beta-Galactosidase From Thermotoga Maritima
(pdb code 6s6z). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of Beta-Galactosidase From Thermotoga Maritima, PDB code: 6s6z:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 1 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg3001
b:19.3
occ:1.00
|
OE1
|
A:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
A:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
A:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
A:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
A:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
A:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
A:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
A:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
A:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
A:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
A:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
A:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
A:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
A:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
A:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
A:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
A:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
A:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
A:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
A:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
A:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
A:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
A:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
A:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
A:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
A:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
A:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
A:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
A:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
A:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
A:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
A:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
A:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
A:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
A:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 2 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg3001
b:19.3
occ:1.00
|
OE1
|
D:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
D:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
D:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
D:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
D:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
D:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
D:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
D:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
D:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
D:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
D:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
D:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
D:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
D:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
D:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
D:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
D:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
D:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
D:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
D:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
D:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
D:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
D:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
D:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
D:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
D:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
D:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
D:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
D:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
D:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
D:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
D:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
D:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
D:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
D:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 3 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg3001
b:19.3
occ:1.00
|
OE1
|
B:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
B:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
B:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
B:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
B:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
B:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
B:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
B:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
B:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
B:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
B:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
B:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
B:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
B:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
B:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
B:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
B:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
B:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
B:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
B:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
B:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
B:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
B:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
B:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
B:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
B:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
B:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
B:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
B:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
B:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
B:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
B:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
B:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
B:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
B:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 4 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg3001
b:19.3
occ:1.00
|
OE1
|
H:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
H:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
H:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
H:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
H:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
H:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
H:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
H:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
H:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
H:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
H:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
H:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
H:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
H:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
H:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
H:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
H:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
H:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
H:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
H:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
H:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
H:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
H:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
H:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
H:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
H:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
H:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
H:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
H:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
H:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
H:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
H:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
H:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
H:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
H:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 5 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg3001
b:19.3
occ:1.00
|
OE1
|
F:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
F:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
F:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
F:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
F:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
F:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
F:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
F:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
F:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
F:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
F:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
F:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
F:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
F:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
F:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
F:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
F:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
F:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
F:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
F:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
F:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
F:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
F:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
F:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
F:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
F:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
F:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
F:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
F:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
F:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
F:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
F:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
F:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
F:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
F:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 6 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg3001
b:19.3
occ:1.00
|
OE1
|
G:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
G:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
G:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
G:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
G:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
G:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
G:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
G:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
G:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
G:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
G:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
G:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
G:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
G:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
G:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
G:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
G:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
G:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
G:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
G:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
G:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
G:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
G:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
G:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
G:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
G:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
G:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
G:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
G:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
G:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
G:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
G:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
G:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
G:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
G:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 7 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg3001
b:19.3
occ:1.00
|
OE1
|
E:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
E:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
E:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
E:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
E:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
E:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
E:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
E:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
E:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
E:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
E:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
E:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
E:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
E:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
E:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
E:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
E:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
E:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
E:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
E:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
E:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
E:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
E:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
E:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
E:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
E:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
E:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
E:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
E:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
E:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
E:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
E:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
E:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
E:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
E:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 6s6z
Go back to
Magnesium Binding Sites List in 6s6z
Magnesium binding site 8 out
of 8 in the Structure of Beta-Galactosidase From Thermotoga Maritima
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Beta-Galactosidase From Thermotoga Maritima within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg3001
b:19.3
occ:1.00
|
OE1
|
C:GLU586
|
2.2
|
46.9
|
1.0
|
|
O
|
C:ALA511
|
2.2
|
34.0
|
1.0
|
|
OE1
|
C:GLU584
|
2.3
|
46.5
|
1.0
|
|
O
|
C:GLY575
|
2.3
|
31.0
|
1.0
|
|
O
|
C:HOH3236
|
2.4
|
37.2
|
1.0
|
|
O
|
C:GLY513
|
2.5
|
31.7
|
1.0
|
|
CD
|
C:GLU586
|
3.2
|
53.1
|
1.0
|
|
C
|
C:ALA511
|
3.5
|
31.4
|
1.0
|
|
OE2
|
C:GLU586
|
3.6
|
47.6
|
1.0
|
|
C
|
C:GLY575
|
3.6
|
33.5
|
1.0
|
|
C
|
C:GLY513
|
3.6
|
38.0
|
1.0
|
|
CD
|
C:GLU584
|
3.6
|
53.1
|
1.0
|
|
N
|
C:GLY513
|
3.7
|
39.1
|
1.0
|
|
CA
|
C:GLY513
|
4.1
|
37.1
|
1.0
|
|
CB
|
C:ALA511
|
4.1
|
36.1
|
1.0
|
|
C
|
C:MET512
|
4.2
|
39.5
|
1.0
|
|
CA
|
C:ALA511
|
4.3
|
32.1
|
1.0
|
|
N
|
C:MET512
|
4.4
|
33.3
|
1.0
|
|
OE2
|
C:GLU584
|
4.4
|
55.3
|
1.0
|
|
N
|
C:GLY575
|
4.4
|
31.3
|
1.0
|
|
N
|
C:VAL576
|
4.5
|
32.5
|
1.0
|
|
CG
|
C:GLU586
|
4.5
|
44.7
|
1.0
|
|
CA
|
C:MET512
|
4.5
|
36.9
|
1.0
|
|
CG
|
C:GLU584
|
4.6
|
46.8
|
1.0
|
|
CA
|
C:GLY575
|
4.6
|
32.9
|
1.0
|
|
O
|
C:HOH3195
|
4.7
|
40.6
|
1.0
|
|
CA
|
C:VAL576
|
4.7
|
34.4
|
1.0
|
|
N
|
C:ASN514
|
4.7
|
36.2
|
1.0
|
|
C
|
C:ASN574
|
4.8
|
38.7
|
1.0
|
|
OD1
|
C:ASP542
|
4.9
|
51.2
|
1.0
|
|
CE1
|
C:TYR883
|
4.9
|
48.1
|
1.0
|
|
CB
|
C:GLU584
|
4.9
|
44.6
|
1.0
|
|
O
|
C:MET512
|
4.9
|
39.1
|
1.0
|
|
O
|
C:ASN574
|
5.0
|
42.8
|
1.0
|
|
O
|
C:HOH3103
|
5.0
|
35.9
|
1.0
|
|
Reference:
S.Miguez Amil,
E.Jimenez-Ortega,
M.Ramirez-Escudero,
D.Talens-Perales,
J.Marin-Navarro,
J.Polaina,
J.Sanz-Aparicio,
R.Fernandez-Leiro.
The Cryo-Em Structure Ofthermotoga Maritimabeta-Galactosidase: Quaternary Structure Guides Protein Engineering. Acs Chem.Biol. V. 15 179 2020.
ISSN: ESSN 1554-8937
PubMed: 31874027
DOI: 10.1021/ACSCHEMBIO.9B00752
Page generated: Tue Oct 1 17:47:20 2024
|
