Magnesium in PDB 6s85: Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna.

The structure of Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna. also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Magnesium atom in the Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna. (pdb code 6s85). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna., PDB code: 6s85:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1102 b:58.3 occ:1.00 O2B C:ADP1101 2.1 71.3 1.0 OE1 C:GLN155 2.4 70.0 1.0 O3B C:ADP1101 2.4 71.3 1.0 PB C:ADP1101 2.5 71.3 1.0 OG1 C:THR44 2.9 58.3 1.0 O1B C:ADP1101 3.2 71.3 1.0 CD C:GLN155 3.5 70.0 1.0 O3A C:ADP1101 4.0 71.3 1.0 CE C:LYS43 4.0 66.7 1.0 CB C:THR44 4.1 58.3 1.0 CB C:GLN155 4.4 70.0 1.0 NE2 C:GLN155 4.4 70.0 1.0 CG C:GLN155 4.5 70.0 1.0 N C:THR44 4.7 58.3 1.0 NZ C:LYS43 4.7 66.7 1.0 CD C:GLU984 4.7 82.4 1.0 OE2 C:GLU984 4.8 82.4 1.0 OE1 C:GLU984 4.9 82.4 1.0 CA C:THR44 5.0 58.3 1.0

Magnesium binding site 2 out of 2 in the Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cutting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Dsdna. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1102 b:75.4 occ:1.00 O2B D:ADP1101 2.1 68.9 1.0 NE2 D:GLN155 2.1 85.6 1.0 PB D:ADP1101 2.5 68.9 1.0 O3B D:ADP1101 2.7 68.9 1.0 CD D:GLN155 2.7 85.6 1.0 OE1 D:GLN155 2.8 85.6 1.0 OG1 D:THR44 2.8 64.5 1.0 OE2 D:GLU984 2.8 96.7 1.0 O1B D:ADP1101 3.0 68.9 1.0 OD1 D:ASP983 3.5 85.4 1.0 CD D:GLU984 3.5 96.7 1.0 O3A D:ADP1101 4.0 68.9 1.0 CG D:GLN155 4.1 85.6 1.0 OE1 D:GLU984 4.2 96.7 1.0 CB D:THR44 4.2 64.5 1.0 CG D:GLU984 4.3 96.7 1.0 CG D:ASP983 4.5 85.4 1.0 NZ D:LYS43 4.6 66.3 1.0 OD2 D:ASP983 4.7 85.4 1.0 N C:GLY953 4.7 75.8 1.0 CB D:GLN155 4.7 85.6 1.0 N D:THR44 4.8 64.5 1.0 OG C:SER952 4.9 77.7 1.0 O2A D:ADP1101 4.9 68.9 1.0 PA D:ADP1101 4.9 68.9 1.0 CG2 D:THR44 5.0 64.5 1.0

L.Kashammer, J.H.Saathoff, K.Lammens, F.Gut, J.Bartho, A.Alt, B.Kessler, K.P.Hopfner. Mechanism of Dna End Sensing and Processing By the MRE11-RAD50 Complex. Mol.Cell V. 76 382 2019.
ISSN: ISSN 1097-2765
PubMed: 31492634
DOI: 10.1016/J.MOLCEL.2019.07.035