Magnesium in PDB 6sae: Cryo-Em Structure of Tmv in Water

The binding sites of Magnesium atom in the Cryo-Em Structure of Tmv in Water (pdb code 6sae). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Tmv in Water, PDB code: 6sae:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Tmv in Water


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Tmv in Water within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg101 b:8.8 occ:1.00 OP2 R:A5 2.9 3.6 1.0 OP1 R:G4 3.1 5.6 1.0 OP1 R:A5 3.4 3.6 1.0 P R:G4 3.5 5.6 1.0 P R:A5 3.6 3.6 1.0 MG R:MG102 3.7 12.1 1.0 C5' R:G4 3.9 5.6 1.0 O5' R:G4 4.1 5.6 1.0 MG R:MG103 4.2 6.8 1.0 O3' R:G4 4.5 5.6 1.0 OP2 R:G4 4.8 5.6 1.0 O R:HOH202 4.9 6.1 1.0 C4' R:G4 4.9 5.6 1.0 C3' R:G4 4.9 5.6 1.0 O5' R:A5 4.9 3.6 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Tmv in Water


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Tmv in Water within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg102 b:12.1 occ:1.00 OP1 R:G4 2.7 5.6 1.0 MG R:MG101 3.7 8.8 1.0 P R:G4 3.7 5.6 1.0 OP2 R:G4 4.2 5.6 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Tmv in Water


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Tmv in Water within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg103 b:6.8 occ:1.00 OP1 R:A6 2.6 3.6 1.0 OP1 R:A5 2.8 3.6 1.0 O3' R:A5 3.6 3.6 1.0 C3' R:A5 3.6 3.6 1.0 P R:A6 3.6 3.6 1.0 P R:A5 3.9 3.6 1.0 C5' R:A6 4.2 3.6 1.0 O5' R:A5 4.2 3.6 1.0 MG R:MG101 4.2 8.8 1.0 O5' R:A6 4.4 3.6 1.0 OP2 R:A5 4.5 3.6 1.0 C2' R:A5 4.6 3.6 1.0 C5' R:A5 4.7 3.6 1.0 C4' R:A5 4.7 3.6 1.0 OP2 R:A6 4.9 3.6 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Tmv in Water


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Tmv in Water within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg104 b:9.7 occ:1.00 OP2 R:G4 2.6 5.6 1.0 O R:HOH205 2.9 13.3 1.0 O R:HOH202 3.9 6.1 1.0 P R:G4 4.0 5.6 1.0 O R:HOH204 4.5 8.5 1.0 N7 R:G4 4.6 5.6 1.0 O5' R:G4 4.8 5.6 1.0 C8 R:G4 4.9 5.6 1.0

F.Weis, M.Beckers, I.Von Der Hocht, C.Sachse. Elucidation of the Viral Disassembly Switch of Tobacco Mosaic Virus. Embo Rep. V. 20 48451 2019.
ISSN: ESSN 1469-3178
PubMed: 31535454
DOI: 10.15252/EMBR.201948451