Magnesium in PDB 6sbj: X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed

Enzymatic activity of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed

All present enzymatic activity of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed:
3.7.1.5; 4.1.1.112;

Protein crystallography data

The structure of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed, PDB code: 6sbj was solved by B.Rupp, A.Naschberger, A.K.H.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.65 / 2.22
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.401, 69.959, 107.557, 90.00, 92.25, 90.00
R / Rfree (%) 19.3 / 25.7

Other elements in 6sbj:

The structure of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed (pdb code 6sbj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed, PDB code: 6sbj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 1 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:15.9
occ:1.00
 O A:LYS21 2.3 10.9 1.0
O B:LYS21 2.4 10.2 1.0
O B:HOH423 2.5 3.7 1.0
OD1 A:ASN22 2.6 11.4 1.0
OD1 B:ASN22 2.7 9.3 1.0
O A:HOH403 2.7 5.4 1.0
C A:LYS21 3.2 11.3 1.0
C B:LYS21 3.3 10.0 1.0
CG A:ASN22 3.6 11.5 1.0
CG B:ASN22 3.7 9.3 1.0
CA A:ASN22 3.7 11.3 1.0
CA B:ASN22 3.7 9.4 1.0
N A:ASN22 3.8 11.5 1.0
N B:ASN22 3.9 9.6 1.0
CB A:ASN22 4.1 11.3 1.0
CB B:ASN22 4.2 9.4 1.0
CA A:LYS21 4.2 11.6 1.0
CA B:LYS21 4.3 10.4 1.0
N B:SER52 4.4 10.9 1.0
N A:SER52 4.5 9.6 1.0
CB A:LYS21 4.6 11.8 1.0
ND2 A:ASN22 4.6 11.7 1.0
CB B:LYS21 4.6 10.6 1.0
ND2 B:ASN22 4.7 9.4 1.0
CA B:PRO51 4.7 10.3 1.0
CA A:PRO51 4.7 9.5 1.0
O A:LYS50 4.9 8.8 1.0
O B:LYS50 4.9 10.2 1.0
C A:ASN22 4.9 11.1 1.0
CB B:SER52 5.0 11.5 1.0
C B:ASN22 5.0 9.1 1.0

Magnesium binding site 2 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 2 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:9.8
occ:1.00
 OE2 A:GLU76 1.8 8.9 1.0
O A:HOH402 2.1 9.9 1.0
OE1 A:GLU74 2.1 16.5 1.0
O A:HOH408 2.2 12.0 1.0
OD2 A:ASP105 2.2 11.6 1.0
O A:HOH422 2.3 14.4 1.0
CD A:GLU76 2.8 8.8 1.0
CG A:ASP105 3.3 11.8 1.0
OE1 A:GLU76 3.3 8.9 1.0
CD A:GLU74 3.4 19.7 1.0
CB A:ASP105 3.6 12.4 1.0
O A:VAL26 3.7 14.7 1.0
NZ A:LYS126 4.1 21.3 1.0
CG A:GLU76 4.1 8.7 1.0
OE2 A:GLU74 4.1 24.5 1.0
O A:GLY27 4.1 24.7 1.0
CB A:GLU74 4.3 14.2 1.0
CA A:GLY194 4.4 9.5 1.0
OD1 A:ASP105 4.4 10.9 1.0
CG A:GLU74 4.4 16.2 1.0
N A:THR195 4.6 9.5 1.0
CZ A:PHE48 4.6 23.2 1.0
CG2 A:THR195 4.7 10.0 1.0
CB A:THR195 4.7 9.9 1.0
C A:GLY194 4.7 9.5 1.0
O A:HOH433 4.8 11.4 1.0
N A:GLY194 4.9 9.2 1.0
O A:HOH432 5.0 4.1 1.0
C A:VAL26 5.0 15.4 1.0

Magnesium binding site 3 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 3 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:12.3
occ:1.00
 O B:HOH436 1.9 13.0 1.0
OD2 B:ASP105 2.0 20.0 1.0
O B:HOH422 2.0 14.2 1.0
OE1 B:GLU74 2.1 14.4 1.0
O B:HOH410 2.1 4.4 1.0
OE2 B:GLU76 2.2 11.6 1.0
CG B:ASP105 3.1 14.9 1.0
CD B:GLU74 3.3 14.9 1.0
CD B:GLU76 3.3 11.4 1.0
NZ B:LYS126 3.6 15.0 1.0
CB B:ASP105 3.6 14.8 1.0
OE1 B:GLU76 3.8 11.5 1.0
O B:VAL26 3.8 20.4 1.0
OE2 B:GLU74 4.0 14.8 1.0
CZ B:PHE48 4.1 11.5 1.0
OD1 B:ASP105 4.2 12.9 1.0
O B:GLY27 4.3 57.1 1.0
CG B:GLU74 4.4 14.0 1.0
CB B:GLU74 4.5 13.6 1.0
CE2 B:PHE48 4.5 11.7 1.0
CG B:GLU76 4.6 11.5 1.0
CA B:GLY194 4.8 11.9 1.0
CE B:LYS126 4.8 15.2 1.0
CG2 B:THR195 4.9 15.2 1.0
N B:THR195 4.9 14.0 1.0
C B:VAL26 5.0 19.7 1.0
CB B:THR195 5.0 15.5 1.0

Magnesium binding site 4 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 4 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:29.6
occ:1.00
 OE1 C:GLU74 1.9 41.2 1.0
O C:HOH402 2.2 20.3 1.0
OE2 C:GLU76 2.2 26.4 1.0
O C:HOH412 2.2 17.9 1.0
OD2 C:ASP105 2.8 19.9 1.0
CD C:GLU74 3.1 42.7 1.0
CD C:GLU76 3.3 26.1 1.0
OE2 C:GLU74 3.8 43.6 1.0
O C:GLY27 3.9 56.5 1.0
OE1 C:GLU76 3.9 24.5 1.0
CG C:ASP105 3.9 21.8 1.0
O C:VAL26 3.9 32.7 1.0
CG2 C:THR195 4.1 38.2 1.0
NZ C:LYS126 4.2 31.3 1.0
CB C:ASP105 4.2 24.2 1.0
CG C:GLU74 4.2 39.0 1.0
CB C:THR195 4.3 39.3 1.0
N C:THR195 4.3 37.0 1.0
CB C:GLU74 4.3 38.6 1.0
CA C:GLY194 4.4 29.5 1.0
CG C:GLU76 4.5 28.1 1.0
C C:GLY194 4.6 32.6 1.0
C C:GLY27 4.8 44.8 1.0
CZ C:PHE48 4.9 19.4 1.0
CA C:THR195 4.9 38.4 1.0
OD1 C:ASP105 5.0 20.8 1.0

Magnesium binding site 5 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 5 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:23.4
occ:1.00
 O C:LYS21 2.2 25.9 1.0
O D:LYS21 2.4 29.4 1.0
OD1 D:ASN22 2.5 17.5 1.0
O C:HOH408 2.6 15.4 1.0
OD1 C:ASN22 2.6 23.1 1.0
O D:HOH407 2.9 20.3 1.0
C C:LYS21 3.2 26.7 1.0
C D:LYS21 3.3 26.8 1.0
CG D:ASN22 3.5 21.8 1.0
CG C:ASN22 3.6 22.3 1.0
CA C:ASN22 3.6 24.8 1.0
CA D:ASN22 3.8 24.2 1.0
N C:ASN22 3.8 26.2 1.0
N D:ASN22 3.9 24.7 1.0
CB C:ASN22 4.1 24.0 1.0
CB D:ASN22 4.1 22.8 1.0
CA C:LYS21 4.2 27.8 1.0
CA D:LYS21 4.3 28.1 1.0
N C:SER52 4.3 30.7 1.0
ND2 D:ASN22 4.4 21.8 1.0
CB D:LYS21 4.5 34.0 1.0
CB C:LYS21 4.6 28.4 1.0
ND2 C:ASN22 4.6 20.7 1.0
N D:SER52 4.6 20.6 1.0
CA C:PRO51 4.6 30.5 1.0
O C:LYS50 4.8 24.5 1.0
C C:ASN22 4.8 25.1 1.0
C C:PRO51 4.9 30.0 1.0
CB C:SER52 4.9 31.0 1.0
CA D:PRO51 4.9 22.9 1.0

Magnesium binding site 6 out of 6 in 6sbj

Go back to Magnesium Binding Sites List in 6sbj
Magnesium binding site 6 out of 6 in the X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of X-Ray Structure of Mus Musculus Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) Apo-Form Uuncomplexed within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg302

b:22.8
occ:1.00
 OE2 D:GLU76 2.0 17.9 1.0
O D:HOH401 2.0 10.5 1.0
OE1 D:GLU74 2.1 34.4 1.0
OD2 D:ASP105 2.3 26.0 1.0
O D:HOH419 2.5 30.2 1.0
CD D:GLU76 3.1 17.3 1.0
CD D:GLU74 3.4 38.6 1.0
CG D:ASP105 3.4 22.2 1.0
OE1 D:GLU76 3.6 14.9 1.0
O D:VAL26 3.6 40.3 1.0
CB D:ASP105 3.8 20.1 1.0
NZ D:LYS126 4.0 26.1 1.0
OE2 D:GLU74 4.1 58.9 1.0
O D:GLY27 4.1 40.2 1.0
CG D:GLU76 4.4 17.5 1.0
CZ D:PHE48 4.4 20.5 1.0
CB D:GLU74 4.4 29.1 1.0
CG D:GLU74 4.5 33.2 1.0
CA D:GLY194 4.5 19.1 1.0
OD1 D:ASP105 4.6 19.8 1.0
O D:HOH412 4.6 11.8 1.0
CG2 D:THR195 4.6 25.2 1.0
N D:THR195 4.6 21.7 1.0
CB D:THR195 4.7 25.4 1.0
CE1 D:PHE48 4.8 20.7 1.0
C D:GLY194 4.8 21.6 1.0
C D:VAL26 4.8 32.9 1.0

Reference:

A.K.H.Weiss, A.Naschberger, E.Cappuccio, C.Metzger, L.Mottes, M.Holzknecht, J.Von Velsen, M.W.Bowler, B.Rupp, P.Jansen-Durr. Structural and Functional Comparison of Fumarylacetoacetate Domain Containing Protein 1 (FAHD1) in Human and Mouse. Biosci.Rep. 2020.
ISSN: ISSN 0144-8463
PubMed: 32068790
DOI: 10.1042/BSR20194431
Page generated: Tue Dec 15 00:04:00 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy