Magnesium in PDB 6sch: Nadh-Dependent Variant of Cbadh

Enzymatic activity of Nadh-Dependent Variant of Cbadh

All present enzymatic activity of Nadh-Dependent Variant of Cbadh:
1.1.1.80;

Protein crystallography data

The structure of Nadh-Dependent Variant of Cbadh, PDB code: 6sch was solved by L.Selles Vidal, J.W.Murray, J.T.Heap, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.01 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.812, 99.570, 114.089, 90.00, 102.77, 90.00
R / Rfree (%) 16.4 / 20.8

Other elements in 6sch:

The structure of Nadh-Dependent Variant of Cbadh also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nadh-Dependent Variant of Cbadh (pdb code 6sch). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nadh-Dependent Variant of Cbadh, PDB code: 6sch:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6sch

Go back to Magnesium Binding Sites List in 6sch
Magnesium binding site 1 out of 2 in the Nadh-Dependent Variant of Cbadh


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nadh-Dependent Variant of Cbadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg406

b:39.4
occ:1.00
O19 A:2PE402 2.2 48.2 1.0
C12 A:2PE402 2.4 45.0 1.0
O A:HOH518 2.4 40.9 1.0
O16 A:2PE402 2.5 48.5 1.0
O22 A:2PE402 2.7 44.3 1.0
C15 A:2PE402 2.8 38.3 1.0
C17 A:2PE402 3.0 37.3 1.0
C18 A:2PE402 3.1 38.4 1.0
C14 A:2PE402 3.2 42.5 1.0
O13 A:2PE402 3.2 47.8 1.0
C20 A:2PE402 3.3 29.9 1.0
C11 A:2PE402 3.4 51.9 1.0
C21 A:2PE402 3.4 38.5 1.0
O A:VAL320 3.9 40.0 1.0
O A:SER317 4.4 29.8 1.0
O10 A:2PE402 4.4 61.5 1.0
C9 A:2PE402 4.7 53.2 1.0

Magnesium binding site 2 out of 2 in 6sch

Go back to Magnesium Binding Sites List in 6sch
Magnesium binding site 2 out of 2 in the Nadh-Dependent Variant of Cbadh


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nadh-Dependent Variant of Cbadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg407

b:76.3
occ:1.00
O5B A:NAD401 2.9 0.6 0.8
N A:GLY244 3.2 44.6 1.0
C5B A:NAD401 3.6 99.3 0.8
CA A:GLY243 3.8 40.4 1.0
PA A:NAD401 3.9 0.1 0.8
O1A A:NAD401 4.0 0.6 0.8
O3 A:NAD401 4.0 0.4 0.8
O3D A:NAD401 4.0 87.8 0.8
C A:GLY243 4.1 41.8 1.0
O A:HOH548 4.1 73.2 1.0
CA A:GLY244 4.1 40.9 1.0
OD1 A:ASN266 4.3 46.0 1.0
O4B A:NAD401 4.4 93.8 0.8
O A:GLY244 4.4 44.9 1.0
C4B A:NAD401 4.5 95.0 0.8
C A:GLY244 4.5 45.9 1.0
ND2 A:ASN266 4.7 39.4 1.0
C8A A:NAD401 4.7 88.5 0.8
C3D A:NAD401 4.7 95.2 0.8
CG A:ASN266 4.9 40.1 1.0

Reference:

L.Selles Vidal, J.W.Murray, J.T.Heap. Nadh-Dependent Variant of Cbadh To Be Published.
Page generated: Mon Jan 25 15:12:15 2021

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