Magnesium in PDB 6sj6: Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus

The structure of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus also contains other interesting chemical elements:

Potassium

(K)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 56;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus (pdb code 6sj6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 56 binding sites of Magnesium where determined in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus, PDB code: 6sj6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:26.1 occ:1.00 OP1 A:G1288 2.0 10.6 1.0 OP1 A:U1287 3.1 13.6 1.0 P A:G1288 3.3 10.6 1.0 O3' A:U1287 3.5 13.6 1.0 OP2 A:G1288 4.2 10.6 1.0 OP2 A:G628 4.2 12.5 1.0 OP2 A:A629 4.4 9.1 1.0 O5' A:G1288 4.4 10.6 1.0 P A:U1287 4.4 13.6 1.0 C5' A:G1288 4.5 10.6 1.0 C3' A:U1287 4.5 13.6 1.0 C5' A:U1287 4.5 13.6 1.0 N1 A:A1289 4.6 9.9 1.0 O5' A:U1287 4.8 13.6 1.0 O3' A:G1286 4.9 13.8 1.0 N3 A:U856 4.9 10.0 1.0 O4 A:U856 4.9 10.0 1.0 C4' A:U1287 5.0 13.6 1.0

Magnesium binding site 2 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3002 b:2.2 occ:1.00 C5 A:U29 4.6 11.4 1.0 O6 A:G520 4.6 14.7 1.0 OP2 A:U29 4.6 11.4 1.0 O6 A:G30 4.7 13.9 1.0 O4 A:U29 4.9 11.4 1.0 O5' A:A493 5.0 13.3 1.0

Magnesium binding site 3 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:26.1 occ:1.00 OP2 A:G2084 2.5 11.7 1.0 OP2 A:G2083 2.6 11.2 1.0 P A:G2083 3.6 11.2 1.0 OP1 A:G2083 3.8 11.2 1.0 P A:G2084 3.9 11.7 1.0 OP1 A:G2532 4.2 15.8 1.0 O5' A:G2083 4.2 11.2 1.0 N7 A:G2084 4.3 11.7 1.0 O5' A:G2084 4.4 11.7 1.0 OP1 A:G2084 4.6 11.7 1.0 C8 A:G2084 4.7 11.7 1.0 N6 A:A2085 5.0 11.4 1.0 N7 A:A2085 5.0 11.4 1.0

Magnesium binding site 4 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3004 b:26.1 occ:1.00 OP1 A:C988 4.0 9.7 1.0 C8 A:A989 4.1 22.7 1.0 N7 A:A989 4.1 22.7 1.0 OP1 A:G876 4.3 15.7 1.0 N6 A:A2475 4.5 23.6 1.0 OP2 A:C988 4.5 9.7 1.0 N1 A:A2475 4.6 23.6 1.0 OP1 A:U611 4.7 26.1 1.0 P A:C988 4.8 9.7 1.0 C6 A:A2475 5.0 23.6 1.0

Magnesium binding site 5 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3005 b:7.2 occ:1.00 OP1 A:U610 2.9 28.9 1.0 N7 A:G854 3.4 7.8 1.0 C8 A:G854 4.0 7.8 1.0 P A:U610 4.2 28.9 1.0 OP2 A:G853 4.3 8.2 1.0 N7 A:G853 4.5 8.2 1.0 OP2 A:G854 4.5 7.8 1.0 O5' A:U610 4.5 28.9 1.0 C5 A:G854 4.5 7.8 1.0 O3' A:U609 4.6 20.2 1.0 C8 A:G853 4.6 8.2 1.0 O5' A:G853 4.8 8.2 1.0 O6 A:G854 4.8 7.8 1.0 O4 A:U855 4.8 7.9 1.0

Magnesium binding site 6 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3006 b:26.1 occ:1.00 OP2 A:C1352 1.9 25.7 1.0 OP1 A:G1369 2.0 15.5 1.0 OP1 A:C1351 2.3 18.8 1.0 P A:C1352 3.2 25.7 1.0 P A:G1369 3.4 15.5 1.0 P A:C1351 3.7 18.8 1.0 OP1 A:C1352 3.7 25.7 1.0 O5' A:G1369 3.8 15.5 1.0 O3' A:C1351 4.2 18.8 1.0 O5' A:C1352 4.3 25.7 1.0 OP2 A:G1369 4.3 15.5 1.0 C5' A:G1369 4.3 15.5 1.0 O3' A:C1368 4.3 14.9 1.0 C5' A:C1351 4.4 18.8 1.0 OP2 A:C1351 4.4 18.8 1.0 O5' A:C1351 4.4 18.8 1.0 C3' A:C1351 4.6 18.8 1.0 C4' A:G1369 4.8 15.5 1.0 O3' A:U1350 4.8 16.4 1.0 O4' A:G1369 4.8 15.5 1.0

Magnesium binding site 7 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3007 b:8.9 occ:1.00 OP2 A:G2056 2.2 13.9 1.0 P A:G2056 3.6 13.9 1.0 O5' A:G2056 4.1 13.9 1.0 OP1 A:G2056 4.4 13.9 1.0 OP1 A:U2055 4.5 12.6 1.0 O5' A:U2055 4.6 12.6 1.0 O3' A:U2055 4.7 12.6 1.0 N7 A:G2056 4.7 13.9 1.0 C5' A:U2055 4.7 12.6 1.0 C8 A:G2056 4.8 13.9 1.0 C3' A:U2055 4.8 12.6 1.0 P A:U2055 4.9 12.6 1.0 OP2 A:U2055 5.0 12.6 1.0

Magnesium binding site 8 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3008 b:28.4 occ:1.00 OP2 A:U2518 2.0 24.1 1.0 P A:U2518 3.4 24.1 1.0 OP2 A:G2482 3.5 19.4 1.0 OP1 A:G2481 4.0 22.7 1.0 O3' A:G2517 4.1 22.1 1.0 OP1 A:U2518 4.1 24.1 1.0 O5' A:U2518 4.4 24.1 1.0 O2' A:G2517 4.5 22.1 1.0 C3' A:G2517 4.5 22.1 1.0 P A:G2482 4.5 19.4 1.0 OP1 A:G2482 4.6 19.4 1.0 OP1 A:U2598 4.9 17.8 1.0 C5' A:U2518 5.0 24.1 1.0 P A:G2481 5.0 22.7 1.0

Magnesium binding site 9 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3009 b:11.5 occ:1.00 N7 A:G2521 3.6 15.9 1.0 O6 A:G2521 3.9 15.9 1.0 O6 A:G2522 4.2 13.7 1.0 C5 A:G2521 4.4 15.9 1.0 C6 A:G2521 4.5 15.9 1.0 C8 A:G2521 4.7 15.9 1.0

Magnesium binding site 10 out of 56 in the Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of 50S-Rsfs Complex From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3010 b:26.1 occ:1.00 N7 A:G2522 2.2 13.7 1.0 C8 A:G2522 2.7 13.7 1.0 OP2 A:G2522 3.2 13.7 1.0 C5 A:G2522 3.5 13.7 1.0 C8 A:G2521 3.9 15.9 1.0 O5' A:G2522 4.0 13.7 1.0 N7 A:G2521 4.0 15.9 1.0 N9 A:G2522 4.1 13.7 1.0 C3' A:G2521 4.1 15.9 1.0 P A:G2522 4.1 13.7 1.0 O6 A:G2522 4.2 13.7 1.0 C6 A:G2522 4.2 13.7 1.0 N9 A:G2521 4.2 15.9 1.0 C5 A:G2521 4.3 15.9 1.0 C4 A:G2522 4.4 13.7 1.0 C4 A:G2521 4.5 15.9 1.0 N4 A:C2523 4.5 15.9 1.0 C5 A:C2523 4.7 15.9 1.0 O3' A:G2521 4.7 15.9 1.0 C2' A:G2521 4.7 15.9 1.0 C1' A:G2521 4.9 15.9 1.0 C4 A:C2523 5.0 15.9 1.0

I.Khusainov, B.Fatkhullin, S.Pellegrino, A.Bikmullin, W.T.Liu, A.Gabdulkhakov, D.Zeyer, N.Trachtmann, G.A.Sprenger, S.Validov, K.Usachev, G.Yusupova, M.Yusupov. Mechanism of Ribosome Shutdown By Rsfs in Staphylococcus Aureus Revealed By Integrative Structural Biology Approach Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-15517-0