Magnesium in PDB 6sqj: Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1

The structure of Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1, PDB code: 6sqj was solved by V.Kremling, B.Loll, W.Azab, N.Osterrieder, I.Dahmani, P.Chiantia, M.Wahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.80 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.860, 94.464, 101.296, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 25.7

The binding sites of Magnesium atom in the Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1 (pdb code 6sqj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1, PDB code: 6sqj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:62.5 occ:1.00 O A:HOH514 2.0 56.1 1.0 OD2 B:ASP261 2.2 80.2 1.0 O B:HOH502 2.3 53.7 1.0 O B:HOH505 2.3 64.7 1.0 O B:HOH542 2.3 63.8 1.0 OE1 A:GLU242 2.4 64.7 1.0 OE2 A:GLU242 2.5 60.6 1.0 OD1 B:ASP261 2.7 65.0 1.0 CD A:GLU242 2.8 69.5 1.0 CG B:ASP261 2.8 68.9 1.0 CB B:ASP261 4.3 60.9 1.0 CG A:GLU242 4.4 51.3 1.0 O B:HOH581 4.4 56.6 1.0 O B:TRP257 4.5 50.3 1.0 CG2 A:THR58 4.5 68.5 1.0 OD1 A:ASP152 4.5 56.3 1.0 OD2 A:ASP152 4.7 54.9 1.0 ND2 A:ASN244 4.8 54.0 1.0 CB A:THR58 4.9 76.7 1.0 CG A:ASP152 5.0 57.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:84.3 occ:1.00 O B:HOH528 2.2 66.6 1.0 OE1 B:GLU242 2.3 83.2 1.0 O B:HOH540 2.3 76.3 1.0 OE2 B:GLU242 2.3 73.9 1.0 O A:HOH533 2.4 73.5 1.0 OD2 A:ASP261 2.4 79.8 1.0 CD B:GLU242 2.6 72.9 1.0 CG A:ASP261 3.2 73.2 1.0 OD1 A:ASP261 3.4 86.0 1.0 CG B:GLU242 4.1 60.3 1.0 OD1 B:ASP152 4.2 51.2 1.0 OD2 B:ASP152 4.2 56.9 1.0 CG B:ASP152 4.5 54.2 1.0 CB A:ASP261 4.6 60.3 1.0 CG2 B:THR58 4.8 58.3 1.0 CB B:THR58 4.9 66.5 1.0

V.Kremling, B.Loll, W.Azab, N.Osterrieder, I.Dahmani, P.Chiantia. Crystal Structure of Glycoprotein D of Equine Herpesvirus Type 1 To Be Published.