Magnesium in PDB 6sul: Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Enzymatic activity of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
All present enzymatic activity of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami:
2.7.1.230;
Protein crystallography data
The structure of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami, PDB code: 6sul
was solved by
G.P.Bourenkov,
Y.A.Mokrushina,
S.S.Terekhov,
I.V.Smirnov,
A.G.Gabibov,
S.Altman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
99.78 /
1.35
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
45.340,
76.770,
101.200,
89.95,
99.62,
91.44
|
R / Rfree (%)
|
14.9 /
18.8
|
Other elements in 6sul:
The structure of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
(pdb code 6sul). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami, PDB code: 6sul:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 1 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:19.8
occ:1.00
|
O1B
|
A:ANP407
|
2.0
|
21.0
|
1.0
|
O1G
|
A:ANP407
|
2.0
|
20.6
|
1.0
|
OD2
|
A:ASP219
|
2.1
|
18.9
|
1.0
|
O
|
A:HOH523
|
2.1
|
21.6
|
1.0
|
O
|
A:HOH545
|
2.1
|
20.3
|
1.0
|
OD1
|
A:ASP219
|
2.3
|
20.1
|
1.0
|
CG
|
A:ASP219
|
2.5
|
18.4
|
1.0
|
PG
|
A:ANP407
|
3.1
|
21.1
|
1.0
|
PB
|
A:ANP407
|
3.2
|
19.9
|
1.0
|
N3B
|
A:ANP407
|
3.5
|
20.6
|
1.0
|
MG
|
A:MG402
|
3.6
|
18.3
|
0.2
|
O3G
|
A:ANP407
|
3.7
|
20.6
|
1.0
|
OD2
|
A:ASP222
|
3.8
|
22.7
|
1.0
|
CB
|
A:ASP219
|
4.0
|
18.5
|
1.0
|
OD2
|
A:ASP202
|
4.1
|
21.3
|
1.0
|
O3A
|
A:ANP407
|
4.2
|
20.4
|
1.0
|
CB
|
A:ASP221
|
4.3
|
21.7
|
1.0
|
NAD
|
A:UAM406
|
4.3
|
22.0
|
1.0
|
O2B
|
A:ANP407
|
4.3
|
22.6
|
1.0
|
NZ
|
A:LYS52
|
4.3
|
23.0
|
1.0
|
ND2
|
A:ASN37
|
4.4
|
23.3
|
1.0
|
O2G
|
A:ANP407
|
4.4
|
20.6
|
1.0
|
OD2
|
A:ASP221
|
4.5
|
23.6
|
1.0
|
CB
|
A:GLU36
|
4.5
|
27.2
|
1.0
|
O1A
|
A:ANP407
|
4.6
|
21.1
|
1.0
|
O2A
|
A:ANP407
|
4.6
|
20.3
|
1.0
|
PA
|
A:ANP407
|
4.6
|
20.1
|
1.0
|
OAI
|
A:UAM406
|
4.7
|
21.3
|
1.0
|
CG
|
A:GLU36
|
4.7
|
31.2
|
1.0
|
O
|
A:ASP219
|
4.8
|
20.0
|
1.0
|
ND2
|
A:ASN207
|
4.9
|
18.2
|
1.0
|
CA
|
A:ASP219
|
4.9
|
17.7
|
1.0
|
CG
|
A:ASP222
|
5.0
|
21.3
|
1.0
|
CG
|
A:ASP221
|
5.0
|
21.9
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 2 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:18.3
occ:0.20
|
O3G
|
A:ANP407
|
1.9
|
20.6
|
1.0
|
O1A
|
A:ANP407
|
1.9
|
21.1
|
1.0
|
OD2
|
A:ASP219
|
2.0
|
18.9
|
1.0
|
OD1
|
A:ASN207
|
2.0
|
18.6
|
1.0
|
PG
|
A:ANP407
|
2.8
|
21.1
|
1.0
|
O
|
A:HOH664
|
2.9
|
24.7
|
1.0
|
CG
|
A:ASN207
|
2.9
|
17.6
|
1.0
|
CG
|
A:ASP219
|
3.0
|
18.4
|
1.0
|
N3B
|
A:ANP407
|
3.1
|
20.6
|
1.0
|
PA
|
A:ANP407
|
3.1
|
20.1
|
1.0
|
ND2
|
A:ASN207
|
3.3
|
18.2
|
1.0
|
CB
|
A:ASP219
|
3.4
|
18.5
|
1.0
|
O1G
|
A:ANP407
|
3.5
|
20.6
|
1.0
|
MG
|
A:MG401
|
3.6
|
19.8
|
1.0
|
O3A
|
A:ANP407
|
3.7
|
20.4
|
1.0
|
PB
|
A:ANP407
|
3.7
|
19.9
|
1.0
|
O2A
|
A:ANP407
|
3.8
|
20.3
|
1.0
|
O1B
|
A:ANP407
|
3.8
|
21.0
|
1.0
|
CE1
|
A:HIS204
|
3.9
|
18.9
|
1.0
|
NE2
|
A:HIS204
|
3.9
|
19.1
|
1.0
|
OD1
|
A:ASP219
|
4.0
|
20.1
|
1.0
|
O2G
|
A:ANP407
|
4.2
|
20.6
|
1.0
|
CB
|
A:ASN207
|
4.3
|
18.0
|
1.0
|
O5'
|
A:ANP407
|
4.4
|
20.1
|
1.0
|
O
|
A:GLY206
|
4.4
|
21.5
|
1.0
|
O
|
A:HOH545
|
4.5
|
20.3
|
1.0
|
OD2
|
A:ASP202
|
4.6
|
21.3
|
1.0
|
CA
|
A:ASN207
|
4.7
|
18.4
|
1.0
|
C
|
A:GLY206
|
4.7
|
19.4
|
1.0
|
O
|
A:HOH733
|
4.8
|
25.1
|
1.0
|
O3'
|
A:ANP407
|
4.8
|
23.8
|
1.0
|
C5'
|
A:ANP407
|
4.8
|
20.6
|
1.0
|
CA
|
A:ASP219
|
4.9
|
17.7
|
1.0
|
N
|
A:ASN207
|
4.9
|
17.6
|
1.0
|
O
|
A:HOH530
|
5.0
|
23.6
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 3 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:18.5
occ:1.00
|
O3G
|
B:ANP406
|
2.0
|
19.0
|
1.0
|
O
|
B:HOH586
|
2.0
|
20.1
|
1.0
|
O2B
|
B:ANP406
|
2.0
|
19.5
|
1.0
|
OD2
|
B:ASP219
|
2.1
|
19.6
|
1.0
|
O
|
B:HOH527
|
2.1
|
19.3
|
1.0
|
OD1
|
B:ASP219
|
2.3
|
20.0
|
1.0
|
CG
|
B:ASP219
|
2.5
|
18.3
|
1.0
|
PG
|
B:ANP406
|
3.1
|
20.0
|
1.0
|
PB
|
B:ANP406
|
3.2
|
19.1
|
1.0
|
N3B
|
B:ANP406
|
3.5
|
19.2
|
1.0
|
MG
|
B:MG402
|
3.6
|
16.8
|
0.2
|
O2G
|
B:ANP406
|
3.7
|
20.3
|
1.0
|
OD2
|
B:ASP222
|
3.8
|
21.7
|
1.0
|
CB
|
B:ASP219
|
4.0
|
19.1
|
1.0
|
OD2
|
B:ASP202
|
4.1
|
19.9
|
1.0
|
O3A
|
B:ANP406
|
4.2
|
19.8
|
1.0
|
NAD
|
B:UAM405
|
4.2
|
21.6
|
1.0
|
CB
|
B:ASP221
|
4.3
|
20.7
|
1.0
|
NZ
|
B:LYS52
|
4.3
|
22.5
|
1.0
|
O1B
|
B:ANP406
|
4.4
|
21.1
|
1.0
|
O1G
|
B:ANP406
|
4.4
|
21.1
|
1.0
|
ND2
|
B:ASN37
|
4.4
|
21.0
|
1.0
|
OD2
|
B:ASP221
|
4.4
|
21.9
|
1.0
|
O1A
|
B:ANP406
|
4.5
|
20.3
|
1.0
|
CB
|
B:GLU36
|
4.6
|
22.9
|
1.0
|
O2A
|
B:ANP406
|
4.6
|
22.7
|
1.0
|
OAI
|
B:UAM405
|
4.6
|
21.1
|
1.0
|
PA
|
B:ANP406
|
4.6
|
20.1
|
1.0
|
CG
|
B:GLU36
|
4.7
|
26.8
|
1.0
|
O
|
B:ASP219
|
4.8
|
21.2
|
1.0
|
ND2
|
B:ASN207
|
4.9
|
19.9
|
1.0
|
CA
|
B:ASP219
|
4.9
|
20.5
|
1.0
|
CG
|
B:ASP221
|
5.0
|
21.1
|
1.0
|
CG
|
B:ASP222
|
5.0
|
19.3
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 4 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:16.8
occ:0.20
|
O1A
|
B:ANP406
|
1.9
|
20.3
|
1.0
|
OD2
|
B:ASP219
|
1.9
|
19.6
|
1.0
|
O2G
|
B:ANP406
|
1.9
|
20.3
|
1.0
|
OD1
|
B:ASN207
|
2.0
|
19.6
|
1.0
|
PG
|
B:ANP406
|
2.9
|
20.0
|
1.0
|
CG
|
B:ASP219
|
2.9
|
18.3
|
1.0
|
O
|
B:HOH663
|
2.9
|
24.1
|
1.0
|
CG
|
B:ASN207
|
3.0
|
19.5
|
1.0
|
N3B
|
B:ANP406
|
3.1
|
19.2
|
1.0
|
PA
|
B:ANP406
|
3.1
|
20.1
|
1.0
|
ND2
|
B:ASN207
|
3.3
|
19.9
|
1.0
|
CB
|
B:ASP219
|
3.4
|
19.1
|
1.0
|
O3G
|
B:ANP406
|
3.5
|
19.0
|
1.0
|
MG
|
B:MG401
|
3.6
|
18.5
|
1.0
|
O2A
|
B:ANP406
|
3.7
|
22.7
|
1.0
|
O3A
|
B:ANP406
|
3.7
|
19.8
|
1.0
|
PB
|
B:ANP406
|
3.8
|
19.1
|
1.0
|
O2B
|
B:ANP406
|
3.8
|
19.5
|
1.0
|
CE1
|
B:HIS204
|
3.8
|
20.9
|
1.0
|
NE2
|
B:HIS204
|
3.8
|
19.1
|
1.0
|
OD1
|
B:ASP219
|
4.0
|
20.0
|
1.0
|
O1G
|
B:ANP406
|
4.2
|
21.1
|
1.0
|
CB
|
B:ASN207
|
4.3
|
20.8
|
1.0
|
O5'
|
B:ANP406
|
4.4
|
22.0
|
1.0
|
O
|
B:GLY206
|
4.4
|
23.2
|
1.0
|
O
|
B:HOH527
|
4.5
|
19.3
|
1.0
|
OD2
|
B:ASP202
|
4.6
|
19.9
|
1.0
|
CA
|
B:ASN207
|
4.7
|
21.3
|
1.0
|
C
|
B:GLY206
|
4.8
|
21.5
|
1.0
|
O3'
|
B:ANP406
|
4.8
|
24.9
|
1.0
|
O
|
B:HOH730
|
4.8
|
24.1
|
1.0
|
C5'
|
B:ANP406
|
4.8
|
20.4
|
1.0
|
CA
|
B:ASP219
|
4.9
|
20.5
|
1.0
|
O
|
B:HOH540
|
5.0
|
22.2
|
1.0
|
N
|
B:ASN207
|
5.0
|
20.1
|
1.0
|
ND1
|
B:HIS204
|
5.0
|
20.6
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 5 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg401
b:15.7
occ:1.00
|
O1G
|
C:ANP406
|
1.9
|
16.7
|
1.0
|
O1B
|
C:ANP406
|
2.0
|
17.8
|
1.0
|
O
|
C:HOH551
|
2.1
|
18.0
|
1.0
|
O
|
C:HOH540
|
2.1
|
16.4
|
1.0
|
OD2
|
C:ASP219
|
2.1
|
14.6
|
1.0
|
OD1
|
C:ASP219
|
2.3
|
16.6
|
1.0
|
CG
|
C:ASP219
|
2.5
|
15.3
|
1.0
|
PG
|
C:ANP406
|
3.1
|
17.2
|
1.0
|
PB
|
C:ANP406
|
3.2
|
16.7
|
1.0
|
N3B
|
C:ANP406
|
3.5
|
17.0
|
1.0
|
MG
|
C:MG402
|
3.7
|
13.0
|
0.2
|
O3G
|
C:ANP406
|
3.7
|
18.3
|
1.0
|
OD2
|
C:ASP222
|
3.8
|
19.1
|
1.0
|
CB
|
C:ASP219
|
4.0
|
14.8
|
1.0
|
OD2
|
C:ASP202
|
4.1
|
16.8
|
1.0
|
O3A
|
C:ANP406
|
4.2
|
16.1
|
1.0
|
NAD
|
C:UAM405
|
4.3
|
20.4
|
1.0
|
CB
|
C:ASP221
|
4.3
|
17.8
|
1.0
|
NZ
|
C:LYS52
|
4.3
|
18.5
|
0.5
|
NZ
|
C:LYS52
|
4.3
|
19.8
|
0.5
|
O2B
|
C:ANP406
|
4.4
|
17.7
|
1.0
|
O2G
|
C:ANP406
|
4.4
|
17.5
|
1.0
|
ND2
|
C:ASN37
|
4.5
|
18.9
|
1.0
|
OD2
|
C:ASP221
|
4.5
|
18.6
|
1.0
|
O1A
|
C:ANP406
|
4.5
|
16.6
|
1.0
|
CB
|
C:GLU36
|
4.5
|
23.1
|
1.0
|
PA
|
C:ANP406
|
4.6
|
16.6
|
1.0
|
OAI
|
C:UAM405
|
4.6
|
19.9
|
1.0
|
O2A
|
C:ANP406
|
4.6
|
16.5
|
1.0
|
CG
|
C:GLU36
|
4.7
|
26.4
|
1.0
|
O
|
C:ASP219
|
4.8
|
16.0
|
1.0
|
ND2
|
C:ASN207
|
4.9
|
15.2
|
1.0
|
CA
|
C:ASP219
|
4.9
|
14.1
|
1.0
|
CG
|
C:ASP221
|
4.9
|
16.7
|
1.0
|
CG
|
C:ASP222
|
4.9
|
18.6
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 6 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:13.0
occ:0.20
|
O1A
|
C:ANP406
|
1.8
|
16.6
|
1.0
|
O3G
|
C:ANP406
|
1.9
|
18.3
|
1.0
|
OD1
|
C:ASN207
|
2.0
|
15.5
|
1.0
|
OD2
|
C:ASP219
|
2.1
|
14.6
|
1.0
|
O
|
C:HOH717
|
2.8
|
21.0
|
1.0
|
PG
|
C:ANP406
|
2.9
|
17.2
|
1.0
|
CG
|
C:ASN207
|
3.0
|
13.7
|
1.0
|
PA
|
C:ANP406
|
3.0
|
16.6
|
1.0
|
CG
|
C:ASP219
|
3.0
|
15.3
|
1.0
|
N3B
|
C:ANP406
|
3.1
|
17.0
|
1.0
|
ND2
|
C:ASN207
|
3.3
|
15.2
|
1.0
|
CB
|
C:ASP219
|
3.5
|
14.8
|
1.0
|
O1G
|
C:ANP406
|
3.6
|
16.7
|
1.0
|
O3A
|
C:ANP406
|
3.7
|
16.1
|
1.0
|
MG
|
C:MG401
|
3.7
|
15.7
|
1.0
|
O2A
|
C:ANP406
|
3.7
|
16.5
|
1.0
|
PB
|
C:ANP406
|
3.8
|
16.7
|
1.0
|
CE1
|
C:HIS204
|
3.9
|
17.1
|
1.0
|
NE2
|
C:HIS204
|
3.9
|
16.6
|
1.0
|
O1B
|
C:ANP406
|
3.9
|
17.8
|
1.0
|
OD1
|
C:ASP219
|
4.1
|
16.6
|
1.0
|
O2G
|
C:ANP406
|
4.2
|
17.5
|
1.0
|
O5'
|
C:ANP406
|
4.3
|
16.5
|
1.0
|
O
|
C:GLY206
|
4.3
|
16.8
|
1.0
|
CB
|
C:ASN207
|
4.3
|
14.5
|
1.0
|
O
|
C:HOH540
|
4.6
|
16.4
|
1.0
|
OD2
|
C:ASP202
|
4.7
|
16.8
|
1.0
|
C
|
C:GLY206
|
4.7
|
14.9
|
1.0
|
CA
|
C:ASN207
|
4.7
|
13.8
|
1.0
|
O3'
|
C:ANP406
|
4.7
|
19.4
|
1.0
|
C5'
|
C:ANP406
|
4.7
|
18.0
|
1.0
|
O
|
C:HOH783
|
4.7
|
21.6
|
1.0
|
N
|
C:ASN207
|
4.9
|
14.4
|
1.0
|
O
|
C:HOH544
|
4.9
|
19.9
|
1.0
|
C3'
|
C:ANP406
|
4.9
|
18.2
|
1.0
|
CA
|
C:ASP219
|
5.0
|
14.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 7 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg401
b:19.2
occ:1.00
|
O
|
D:HOH1315
|
2.0
|
20.5
|
1.0
|
O3G
|
D:ANP407
|
2.0
|
19.6
|
1.0
|
O2B
|
D:ANP407
|
2.0
|
19.7
|
1.0
|
O
|
D:HOH1261
|
2.1
|
19.5
|
1.0
|
OD2
|
D:ASP219
|
2.1
|
18.0
|
1.0
|
OD1
|
D:ASP219
|
2.3
|
19.5
|
1.0
|
CG
|
D:ASP219
|
2.5
|
17.6
|
1.0
|
PG
|
D:ANP407
|
3.1
|
20.7
|
1.0
|
PB
|
D:ANP407
|
3.2
|
20.5
|
1.0
|
N3B
|
D:ANP407
|
3.5
|
21.4
|
1.0
|
MG
|
D:MG402
|
3.6
|
20.9
|
0.2
|
O2G
|
D:ANP407
|
3.8
|
20.3
|
1.0
|
OD2
|
D:ASP222
|
3.8
|
22.0
|
1.0
|
CB
|
D:ASP219
|
4.0
|
18.3
|
1.0
|
OD2
|
D:ASP202
|
4.1
|
19.1
|
1.0
|
O3A
|
D:ANP407
|
4.2
|
21.0
|
1.0
|
NAD
|
D:UAM406
|
4.2
|
20.4
|
1.0
|
CB
|
D:ASP221
|
4.3
|
21.6
|
1.0
|
NZ
|
D:LYS52
|
4.3
|
24.1
|
1.0
|
O1B
|
D:ANP407
|
4.4
|
23.1
|
1.0
|
O1G
|
D:ANP407
|
4.4
|
19.6
|
1.0
|
ND2
|
D:ASN37
|
4.5
|
23.9
|
1.0
|
O1A
|
D:ANP407
|
4.5
|
20.8
|
1.0
|
OD2
|
D:ASP221
|
4.5
|
23.6
|
1.0
|
O2A
|
D:ANP407
|
4.6
|
21.4
|
1.0
|
PA
|
D:ANP407
|
4.6
|
20.6
|
1.0
|
OAI
|
D:UAM406
|
4.7
|
20.8
|
1.0
|
CB
|
D:GLU36
|
4.7
|
24.7
|
1.0
|
O
|
D:ASP219
|
4.7
|
18.4
|
1.0
|
CG
|
D:GLU36
|
4.8
|
31.6
|
1.0
|
ND2
|
D:ASN207
|
4.8
|
18.3
|
1.0
|
CA
|
D:ASP219
|
4.9
|
18.6
|
1.0
|
CG
|
D:ASP222
|
4.9
|
20.4
|
1.0
|
CG
|
D:ASP221
|
5.0
|
22.8
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 6sul
Go back to
Magnesium Binding Sites List in 6sul
Magnesium binding site 8 out
of 8 in the Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Amicoumacin Kinase Amin in Complex with Amp-Pnp, MG2+ and Ami within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:20.9
occ:0.20
|
O1A
|
D:ANP407
|
1.8
|
20.8
|
1.0
|
O2G
|
D:ANP407
|
1.9
|
20.3
|
1.0
|
OD2
|
D:ASP219
|
2.0
|
18.0
|
1.0
|
OD1
|
D:ASN207
|
2.0
|
18.4
|
1.0
|
PG
|
D:ANP407
|
2.9
|
20.7
|
1.0
|
O
|
D:HOH1371
|
2.9
|
25.7
|
1.0
|
CG
|
D:ASN207
|
3.0
|
17.0
|
1.0
|
CG
|
D:ASP219
|
3.0
|
17.6
|
1.0
|
N3B
|
D:ANP407
|
3.0
|
21.4
|
1.0
|
PA
|
D:ANP407
|
3.0
|
20.6
|
1.0
|
ND2
|
D:ASN207
|
3.3
|
18.3
|
1.0
|
CB
|
D:ASP219
|
3.4
|
18.3
|
1.0
|
O3G
|
D:ANP407
|
3.5
|
19.6
|
1.0
|
MG
|
D:MG401
|
3.6
|
19.2
|
1.0
|
O3A
|
D:ANP407
|
3.7
|
21.0
|
1.0
|
O2A
|
D:ANP407
|
3.7
|
21.4
|
1.0
|
PB
|
D:ANP407
|
3.8
|
20.5
|
1.0
|
O2B
|
D:ANP407
|
3.8
|
19.7
|
1.0
|
NE2
|
D:HIS204
|
3.8
|
18.6
|
1.0
|
CE1
|
D:HIS204
|
3.9
|
18.7
|
1.0
|
OD1
|
D:ASP219
|
4.1
|
19.5
|
1.0
|
O1G
|
D:ANP407
|
4.2
|
19.6
|
1.0
|
O5'
|
D:ANP407
|
4.3
|
20.7
|
1.0
|
CB
|
D:ASN207
|
4.4
|
16.8
|
1.0
|
O
|
D:GLY206
|
4.4
|
21.3
|
1.0
|
O
|
D:HOH1261
|
4.5
|
19.5
|
1.0
|
OD2
|
D:ASP202
|
4.7
|
19.1
|
1.0
|
O3'
|
D:ANP407
|
4.7
|
23.7
|
1.0
|
CA
|
D:ASN207
|
4.7
|
19.2
|
1.0
|
C
|
D:GLY206
|
4.8
|
18.9
|
1.0
|
O
|
D:HOH1449
|
4.8
|
27.7
|
1.0
|
C5'
|
D:ANP407
|
4.8
|
20.2
|
1.0
|
CA
|
D:ASP219
|
4.9
|
18.6
|
1.0
|
C3'
|
D:ANP407
|
5.0
|
23.5
|
1.0
|
O
|
D:HOH1274
|
5.0
|
21.9
|
1.0
|
N
|
D:ASN207
|
5.0
|
17.3
|
1.0
|
|
Reference:
S.S.Terekhov,
Y.A.Mokrushina,
A.S.Nazarov,
A.Zlobin,
A.Zalevsky,
G.Bourenkov,
A.Golovin,
A.Belogurov Jr.,
I.A.Osterman,
A.A.Kulikova,
V.A.Mitkevich,
H.J.Lou,
B.E.Turk,
M.Wilmanns,
I.V.Smirnov,
S.Altman,
A.G.Gabibov.
A Kinase Bioscavenger Provides Antibiotic Resistance By Extremely Tight Substrate Binding. Sci Adv V. 6 Z9861 2020.
ISSN: ESSN 2375-2548
PubMed: 32637600
DOI: 10.1126/SCIADV.AAZ9861
Page generated: Tue Oct 1 18:24:23 2024
|