Atomistry » Magnesium » PDB 6stf-6t25 » 6t0v
Atomistry »
  Magnesium »
    PDB 6stf-6t25 »
      6t0v »

Magnesium in PDB 6t0v: Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)

Enzymatic activity of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)

All present enzymatic activity of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase):
2.7.7.48;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) (pdb code 6t0v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase), PDB code: 6t0v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6t0v

Go back to Magnesium Binding Sites List in 6t0v
Magnesium binding site 1 out of 5 in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:66.6
occ:1.00
 O11 A:M4H801 1.9 59.6 1.0
OE2 A:GLU119 1.9 54.9 1.0
OD2 A:ASP108 1.9 50.1 1.0
O A:ILE120 1.9 56.7 1.0
C A:ILE120 2.8 56.7 1.0
CD A:GLU119 2.9 54.9 1.0
CG A:ASP108 3.0 50.1 1.0
NE2 A:HIS41 3.0 59.8 1.0
N A:ILE120 3.0 56.7 1.0
C2 A:M4H801 3.1 59.6 1.0
CA A:ILE120 3.5 56.7 1.0
CG A:GLU119 3.5 54.9 1.0
OD1 A:ASP108 3.7 50.1 1.0
N A:GLY121 3.8 61.2 1.0
CE1 A:HIS41 3.8 59.8 1.0
OE1 A:GLU119 3.8 54.9 1.0
C A:GLU119 4.0 54.9 1.0
C3 A:M4H801 4.0 59.6 1.0
O10 A:M4H801 4.0 59.6 1.0
CB A:ASP108 4.0 50.1 1.0
C1 A:M4H801 4.0 59.6 1.0
CD2 A:HIS41 4.1 59.8 1.0
CA A:GLY121 4.1 61.2 1.0
CB A:ILE120 4.3 56.7 1.0
CA A:GLU119 4.4 54.9 1.0
CB A:GLU119 4.5 54.9 1.0
MG A:MG803 4.6 61.6 1.0
NZ A:LYS134 4.7 67.0 1.0
O A:GLU119 4.9 54.9 1.0

Magnesium binding site 2 out of 5 in 6t0v

Go back to Magnesium Binding Sites List in 6t0v
Magnesium binding site 2 out of 5 in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:61.6
occ:1.00
 OD1 A:ASP108 1.9 50.1 1.0
O10 A:M4H801 1.9 59.6 1.0
OE1 A:GLU80 2.2 51.1 1.0
CG A:ASP108 2.9 50.1 1.0
C1 A:M4H801 2.9 59.6 1.0
CD A:GLU80 3.4 51.1 1.0
OD2 A:ASP108 3.5 50.1 1.0
O8 A:M4H801 3.6 59.6 1.0
O A:LEU106 3.7 42.3 1.0
O A:PRO107 3.7 44.4 1.0
C2 A:M4H801 3.8 59.6 1.0
O11 A:M4H801 3.8 59.6 1.0
C6 A:M4H801 4.0 59.6 1.0
C A:PRO107 4.1 44.4 1.0
OE2 A:GLU80 4.1 51.1 1.0
CB A:ASP108 4.1 50.1 1.0
CA A:ASP108 4.2 50.1 1.0
C7 A:M4H801 4.3 59.6 1.0
N A:ASP108 4.3 50.1 1.0
CG A:GLU80 4.4 51.1 1.0
C A:LEU106 4.5 42.3 1.0
CB A:GLU80 4.6 51.1 1.0
OE2 A:GLU119 4.6 54.9 1.0
MG A:MG802 4.6 66.6 1.0
OE1 A:GLU119 4.7 54.9 1.0
CA A:PRO107 4.9 44.4 1.0
CE1 A:HIS41 4.9 59.8 1.0
CB A:LEU106 4.9 42.3 1.0

Magnesium binding site 3 out of 5 in 6t0v

Go back to Magnesium Binding Sites List in 6t0v
Magnesium binding site 3 out of 5 in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:22.5
occ:1.00
 O1B B:2KH801 2.1 26.8 1.0
O2A B:2KH801 2.1 26.8 1.0
O2G B:2KH801 2.1 26.8 1.0
O B:ASN306 2.3 20.2 1.0
OD2 B:ASP445 2.8 20.5 1.0
OD2 B:ASP305 2.8 20.4 1.0
OD1 B:ASP305 3.2 20.4 1.0
PB B:2KH801 3.2 26.8 1.0
CG B:ASP305 3.3 20.4 1.0
PA B:2KH801 3.3 26.8 1.0
PG B:2KH801 3.4 26.8 1.0
CG B:ASP445 3.4 20.5 1.0
C B:ASN306 3.5 20.2 1.0
N3A B:2KH801 3.6 26.8 1.0
OD1 B:ASP445 3.7 20.5 1.0
O3B B:2KH801 3.7 26.8 1.0
C5' B:2KH801 4.0 26.8 1.0
MG B:MG804 4.0 21.5 1.0
N B:ASN306 4.1 20.2 1.0
O5' B:2KH801 4.2 26.8 1.0
O1G B:2KH801 4.3 26.8 1.0
CA B:ASN306 4.4 20.2 1.0
O1A B:2KH801 4.4 26.8 1.0
O2B B:2KH801 4.4 26.8 1.0
N B:THR307 4.4 21.1 1.0
O3G B:2KH801 4.5 26.8 1.0
CA B:THR307 4.5 21.1 1.0
CB B:TRP309 4.5 21.2 1.0
N B:LYS308 4.6 23.7 1.0
CB B:ASP445 4.6 20.5 1.0
NZ B:LYS481 4.7 19.5 1.0
CB B:ASP305 4.7 20.4 1.0
N B:TRP309 4.8 21.2 1.0
C B:ASP305 4.9 20.4 1.0
C B:THR307 4.9 21.1 1.0

Magnesium binding site 4 out of 5 in 6t0v

Go back to Magnesium Binding Sites List in 6t0v
Magnesium binding site 4 out of 5 in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg803

b:17.0
occ:1.00
 O B:GLY304 2.8 17.6 1.0
CB B:ASP446 2.9 19.1 1.0
OD2 B:ASP446 3.4 19.1 1.0
CG B:ASP446 3.6 19.1 1.0
CA B:ASP446 3.7 19.1 1.0
C B:GLY304 4.0 17.6 1.0
N B:THR493 4.0 17.2 1.0
N B:PHE447 4.2 16.8 1.0
C B:ASP446 4.3 19.1 1.0
O B:GLU491 4.4 16.2 1.0
CA B:PHE492 4.5 16.9 1.0
OE2 B:GLU491 4.5 16.2 1.0
O B:PHE447 4.6 16.8 1.0
N B:GLY304 4.7 17.6 1.0
N B:ASP305 4.8 20.4 1.0
C B:PHE492 4.8 16.9 1.0
CD1 B:PHE492 4.8 16.9 1.0
MG B:MG804 4.8 21.5 1.0
CB B:ASP305 4.8 20.4 1.0
OD1 B:ASP446 4.8 19.1 1.0
CA B:ASP305 4.8 20.4 1.0
CA B:THR493 4.8 17.2 1.0
OD1 B:ASP305 4.8 20.4 1.0
N B:ASP446 4.9 19.1 1.0
CA B:GLY304 4.9 17.6 1.0

Magnesium binding site 5 out of 5 in 6t0v

Go back to Magnesium Binding Sites List in 6t0v
Magnesium binding site 5 out of 5 in the Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bat Influenza A Polymerase Elongation Complex with Incoming Utp Analogue (Complete Polymerase) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg804

b:21.5
occ:1.00
 OD1 B:ASP305 2.1 20.4 1.0
OD1 B:ASP445 2.4 20.5 1.0
OD2 B:ASP446 2.7 19.1 1.0
O3' M:G26 2.7 22.7 1.0
O2A B:2KH801 3.1 26.8 1.0
CG B:ASP305 3.2 20.4 1.0
CG B:ASP446 3.4 19.1 1.0
CG B:ASP445 3.4 20.5 1.0
OD2 B:ASP445 3.8 20.5 1.0
OD2 B:ASP305 3.9 20.4 1.0
OD1 B:ASP446 3.9 19.1 1.0
C3' M:G26 4.0 22.7 1.0
MG B:MG802 4.0 22.5 1.0
PA B:2KH801 4.0 26.8 1.0
O1A B:2KH801 4.2 26.8 1.0
CB B:ASP446 4.3 19.1 1.0
CB B:ASP305 4.3 20.4 1.0
N B:ASP446 4.3 19.1 1.0
O5' B:2KH801 4.4 26.8 1.0
C5' B:2KH801 4.5 26.8 1.0
CA B:ASP446 4.5 19.1 1.0
C4' M:G26 4.7 22.7 1.0
C5' M:G26 4.7 22.7 1.0
CB B:ASP445 4.7 20.5 1.0
MG B:MG803 4.8 17.0 1.0
C B:ASP445 4.8 20.5 1.0
CA B:ASP305 4.9 20.4 1.0

Reference:

J.M.Wandzik, T.Kouba, M.Karuppasamy, A.Pflug, P.Drncova, J.Provaznik, N.Azevedo, S.Cusack. A Structure-Based Model For the Complete Transcription Cycle of Influenza Polymerase Cell(Cambridge,Mass.) 2020.
ISSN: ISSN 0092-8674
Page generated: Tue Oct 1 18:34:26 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy