Magnesium in PDB 6t5l: Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation

Protein crystallography data

The structure of Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation, PDB code: 6t5l was solved by C.Frohlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.53 / 2.17
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 144.684, 144.684, 53.306, 90.00, 90.00, 120.00
R / Rfree (%) 21.7 / 25.3

Other elements in 6t5l:

The structure of Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation (pdb code 6t5l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation, PDB code: 6t5l:

Magnesium binding site 1 out of 1 in 6t5l

Go back to Magnesium Binding Sites List in 6t5l
Magnesium binding site 1 out of 1 in the Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Myo-1 From Myroides Odoratimimus. Environmental Metallo-Beta- Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:47.3
occ:1.00
HD22 A:ASN215 2.3 66.1 1.0
HA A:ASN215 2.8 60.9 1.0
HE1 A:TYR204 2.9 57.8 1.0
OH A:TYR204 2.9 54.2 1.0
O A:HOH490 3.1 39.1 1.0
HA A:ALA256 3.1 62.3 1.0
ND2 A:ASN215 3.2 55.0 1.0
HB3 A:ASN215 3.2 57.5 1.0
HB2 A:ASN255 3.4 87.9 1.0
HH A:TYR204 3.5 65.0 1.0
CE1 A:TYR204 3.5 48.2 1.0
CA A:ASN215 3.6 50.8 1.0
C A:ASN255 3.6 58.3 1.0
CZ A:TYR204 3.7 51.2 1.0
N A:ALA256 3.7 53.4 1.0
CB A:ASN215 3.7 47.9 1.0
HD21 A:ASN215 3.7 66.1 1.0
O A:ASN255 3.8 57.5 1.0
CA A:ALA256 3.8 51.9 1.0
CG A:ASN215 3.9 53.6 1.0
H A:ASN255 4.0 68.4 1.0
H A:ALA256 4.0 64.1 1.0
HB2 A:ALA256 4.0 61.1 1.0
CB A:ASN255 4.1 73.2 1.0
C A:ASN215 4.1 48.2 1.0
HA A:PRO209 4.2 55.4 1.0
HB3 A:TYR253 4.3 61.6 1.0
CA A:ASN255 4.3 62.2 1.0
HD1 A:TYR253 4.3 65.7 1.0
HB3 A:ASN255 4.3 87.9 1.0
O A:ASN215 4.4 47.3 1.0
CB A:ALA256 4.5 50.9 1.0
HA A:TYR253 4.5 65.1 1.0
N A:ASN255 4.5 57.0 1.0
O A:HOH505 4.6 60.5 1.0
HB2 A:ASN215 4.6 57.5 1.0
H A:ASN215 4.8 58.0 1.0
N A:ASN215 4.8 48.3 1.0
H A:LYS257 4.8 63.8 1.0
N A:ALA216 4.8 43.2 1.0
CD1 A:TYR204 4.9 44.0 1.0
HB1 A:ALA256 4.9 61.1 1.0
H A:ALA216 4.9 51.9 1.0
HD22 A:ASN255 4.9 0.1 1.0
CD1 A:TYR253 5.0 54.7 1.0

Reference:

C.Frohlich, V.Sorum, S.Huber, O.Samuelsen, F.Berglund, E.Kristiansson, S.Kotsakis, M.P.Nachiket, J.D.G.Larsson, H.K.S.Leiros. Environmental Metallo-Beta-Lactamases Exhibit High Enzymatic Activity Under Zinc Deprivation To Be Published.
Page generated: Tue Dec 15 00:07:42 2020

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