Magnesium in PDB 6t8b: Ftsk Motor Domain with Dsdna, Translocating State

The binding sites of Magnesium atom in the Ftsk Motor Domain with Dsdna, Translocating State (pdb code 6t8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Ftsk Motor Domain with Dsdna, Translocating State, PDB code: 6t8b:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:42.6 occ:1.00 O2G A:AGS801 2.0 51.6 1.0 O2B A:AGS801 2.1 51.6 1.0 OG A:SER473 2.1 46.0 1.0 PB A:AGS801 3.2 51.6 1.0 CB A:SER473 3.4 46.0 1.0 PG A:AGS801 3.4 51.6 1.0 O1B A:AGS801 3.4 51.6 1.0 OE1 A:GLU503 3.6 59.5 1.0 O3B A:AGS801 3.7 51.6 1.0 OE2 A:GLU503 3.8 59.5 1.0 N A:SER473 4.0 46.0 1.0 NZ A:LYS500 4.1 57.8 1.0 CD A:GLU503 4.1 59.5 1.0 CA A:SER473 4.2 46.0 1.0 OE2 A:GLU596 4.3 45.5 1.0 O3A A:AGS801 4.5 51.6 1.0 O3G A:AGS801 4.5 51.6 1.0 S1G A:AGS801 4.5 51.6 1.0 O2A A:AGS801 4.6 51.6 1.0 CE A:LYS472 4.6 41.2 1.0 CB A:LYS472 4.8 41.2 1.0 O1A A:AGS801 4.9 51.6 1.0 PA A:AGS801 4.9 51.6 1.0

Magnesium binding site 2 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:56.5 occ:1.00 O2G B:AGS801 1.9 55.5 1.0 OG B:SER473 2.0 46.0 1.0 O2B B:AGS801 2.0 55.5 1.0 O1B B:AGS801 2.3 55.5 1.0 PB B:AGS801 2.5 55.5 1.0 CB B:SER473 2.8 46.0 1.0 PG B:AGS801 3.1 55.5 1.0 O3B B:AGS801 3.2 55.5 1.0 N B:SER473 3.8 46.0 1.0 CA B:SER473 3.9 46.0 1.0 O3A B:AGS801 3.9 55.5 1.0 NZ B:LYS500 4.0 55.2 1.0 O1A B:AGS801 4.1 55.5 1.0 OE2 B:GLU503 4.1 54.5 1.0 O3G B:AGS801 4.1 55.5 1.0 CD B:GLU503 4.2 54.5 1.0 PA B:AGS801 4.3 55.5 1.0 OE1 B:GLU503 4.4 54.5 1.0 O2A B:AGS801 4.4 55.5 1.0 CG B:LYS472 4.4 43.9 1.0 S1G B:AGS801 4.5 55.5 1.0 C B:LYS472 4.5 43.9 1.0 CG B:GLU503 4.8 54.5 1.0 N B:LYS472 5.0 43.9 1.0

Magnesium binding site 3 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:45.5 occ:1.00 OE1 C:GLU503 2.0 54.3 1.0 O2B C:AGS801 2.1 40.5 1.0 O2G C:AGS801 2.1 40.5 1.0 CD C:GLU503 2.7 54.3 1.0 OG C:SER473 2.8 41.4 1.0 OE2 C:GLU503 2.8 54.3 1.0 CB C:SER473 3.3 41.4 1.0 PB C:AGS801 3.5 40.5 1.0 PG C:AGS801 3.6 40.5 1.0 OE2 C:GLU596 3.6 53.4 1.0 OD1 C:ASP595 3.8 50.8 1.0 O1B C:AGS801 4.0 40.5 1.0 O3B C:AGS801 4.1 40.5 1.0 N C:SER473 4.1 41.4 1.0 O1A C:AGS801 4.1 40.5 1.0 CG C:GLU503 4.2 54.3 1.0 OD2 C:ASP595 4.2 50.8 1.0 CA C:SER473 4.3 41.4 1.0 CG C:GLU596 4.3 53.4 1.0 CD C:GLU596 4.4 53.4 1.0 CG C:ASP595 4.4 50.8 1.0 O3G C:AGS801 4.5 40.5 1.0 O3A C:AGS801 4.6 40.5 1.0 PA C:AGS801 4.7 40.5 1.0 CB C:GLU503 4.7 54.3 1.0 O2A C:AGS801 4.8 40.5 1.0 S1G C:AGS801 4.8 40.5 1.0

Magnesium binding site 4 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg802 b:49.8 occ:1.00 O3B F:ADP801 2.0 58.7 1.0 OG F:SER473 2.2 59.3 1.0 O1A F:ADP801 3.1 58.7 1.0 PB F:ADP801 3.3 58.7 1.0 CB F:SER473 3.5 59.3 1.0 O1B F:ADP801 3.8 58.7 1.0 PA F:ADP801 3.9 58.7 1.0 OE2 F:GLU503 4.0 82.2 1.0 O3A F:ADP801 4.1 58.7 1.0 O2A F:ADP801 4.1 58.7 1.0 N F:SER473 4.3 59.3 1.0 CD F:GLU503 4.4 82.2 1.0 CA F:SER473 4.4 59.3 1.0 O2B F:ADP801 4.5 58.7 1.0 OE1 F:GLU503 4.5 82.2 1.0 CD2 F:LEU502 4.7 89.1 1.0 NZ F:LYS500 4.9 86.1 1.0 CD1 F:LEU502 4.9 89.1 1.0

N.L.Jean, T.J.Rutherford, J.Lowe. Ftsk in Motion Reveals Its Mechanism For Double-Stranded Dna Translocation Biorxiv.
DOI: 10.1101/828319