Magnesium in PDB 6t8b: Ftsk Motor Domain with Dsdna, Translocating State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ftsk Motor Domain with Dsdna, Translocating State (pdb code 6t8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Ftsk Motor Domain with Dsdna, Translocating State, PDB code: 6t8b:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6t8b

Go back to Magnesium Binding Sites List in 6t8b
Magnesium binding site 1 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:42.6
occ:1.00
O2G A:AGS801 2.0 51.6 1.0
O2B A:AGS801 2.1 51.6 1.0
OG A:SER473 2.1 46.0 1.0
PB A:AGS801 3.2 51.6 1.0
CB A:SER473 3.4 46.0 1.0
PG A:AGS801 3.4 51.6 1.0
O1B A:AGS801 3.4 51.6 1.0
OE1 A:GLU503 3.6 59.5 1.0
O3B A:AGS801 3.7 51.6 1.0
OE2 A:GLU503 3.8 59.5 1.0
N A:SER473 4.0 46.0 1.0
NZ A:LYS500 4.1 57.8 1.0
CD A:GLU503 4.1 59.5 1.0
CA A:SER473 4.2 46.0 1.0
OE2 A:GLU596 4.3 45.5 1.0
O3A A:AGS801 4.5 51.6 1.0
O3G A:AGS801 4.5 51.6 1.0
S1G A:AGS801 4.5 51.6 1.0
O2A A:AGS801 4.6 51.6 1.0
CE A:LYS472 4.6 41.2 1.0
CB A:LYS472 4.8 41.2 1.0
O1A A:AGS801 4.9 51.6 1.0
PA A:AGS801 4.9 51.6 1.0

Magnesium binding site 2 out of 4 in 6t8b

Go back to Magnesium Binding Sites List in 6t8b
Magnesium binding site 2 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:56.5
occ:1.00
O2G B:AGS801 1.9 55.5 1.0
OG B:SER473 2.0 46.0 1.0
O2B B:AGS801 2.0 55.5 1.0
O1B B:AGS801 2.3 55.5 1.0
PB B:AGS801 2.5 55.5 1.0
CB B:SER473 2.8 46.0 1.0
PG B:AGS801 3.1 55.5 1.0
O3B B:AGS801 3.2 55.5 1.0
N B:SER473 3.8 46.0 1.0
CA B:SER473 3.9 46.0 1.0
O3A B:AGS801 3.9 55.5 1.0
NZ B:LYS500 4.0 55.2 1.0
O1A B:AGS801 4.1 55.5 1.0
OE2 B:GLU503 4.1 54.5 1.0
O3G B:AGS801 4.1 55.5 1.0
CD B:GLU503 4.2 54.5 1.0
PA B:AGS801 4.3 55.5 1.0
OE1 B:GLU503 4.4 54.5 1.0
O2A B:AGS801 4.4 55.5 1.0
CG B:LYS472 4.4 43.9 1.0
S1G B:AGS801 4.5 55.5 1.0
C B:LYS472 4.5 43.9 1.0
CG B:GLU503 4.8 54.5 1.0
N B:LYS472 5.0 43.9 1.0

Magnesium binding site 3 out of 4 in 6t8b

Go back to Magnesium Binding Sites List in 6t8b
Magnesium binding site 3 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg802

b:45.5
occ:1.00
OE1 C:GLU503 2.0 54.3 1.0
O2B C:AGS801 2.1 40.5 1.0
O2G C:AGS801 2.1 40.5 1.0
CD C:GLU503 2.7 54.3 1.0
OG C:SER473 2.8 41.4 1.0
OE2 C:GLU503 2.8 54.3 1.0
CB C:SER473 3.3 41.4 1.0
PB C:AGS801 3.5 40.5 1.0
PG C:AGS801 3.6 40.5 1.0
OE2 C:GLU596 3.6 53.4 1.0
OD1 C:ASP595 3.8 50.8 1.0
O1B C:AGS801 4.0 40.5 1.0
O3B C:AGS801 4.1 40.5 1.0
N C:SER473 4.1 41.4 1.0
O1A C:AGS801 4.1 40.5 1.0
CG C:GLU503 4.2 54.3 1.0
OD2 C:ASP595 4.2 50.8 1.0
CA C:SER473 4.3 41.4 1.0
CG C:GLU596 4.3 53.4 1.0
CD C:GLU596 4.4 53.4 1.0
CG C:ASP595 4.4 50.8 1.0
O3G C:AGS801 4.5 40.5 1.0
O3A C:AGS801 4.6 40.5 1.0
PA C:AGS801 4.7 40.5 1.0
CB C:GLU503 4.7 54.3 1.0
O2A C:AGS801 4.8 40.5 1.0
S1G C:AGS801 4.8 40.5 1.0

Magnesium binding site 4 out of 4 in 6t8b

Go back to Magnesium Binding Sites List in 6t8b
Magnesium binding site 4 out of 4 in the Ftsk Motor Domain with Dsdna, Translocating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ftsk Motor Domain with Dsdna, Translocating State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg802

b:49.8
occ:1.00
O3B F:ADP801 2.0 58.7 1.0
OG F:SER473 2.2 59.3 1.0
O1A F:ADP801 3.1 58.7 1.0
PB F:ADP801 3.3 58.7 1.0
CB F:SER473 3.5 59.3 1.0
O1B F:ADP801 3.8 58.7 1.0
PA F:ADP801 3.9 58.7 1.0
OE2 F:GLU503 4.0 82.2 1.0
O3A F:ADP801 4.1 58.7 1.0
O2A F:ADP801 4.1 58.7 1.0
N F:SER473 4.3 59.3 1.0
CD F:GLU503 4.4 82.2 1.0
CA F:SER473 4.4 59.3 1.0
O2B F:ADP801 4.5 58.7 1.0
OE1 F:GLU503 4.5 82.2 1.0
CD2 F:LEU502 4.7 89.1 1.0
NZ F:LYS500 4.9 86.1 1.0
CD1 F:LEU502 4.9 89.1 1.0

Reference:

N.L.Jean, T.J.Rutherford, J.Lowe. Ftsk in Motion Reveals Its Mechanism For Double-Stranded Dna Translocation Biorxiv.
DOI: 10.1101/828319
Page generated: Tue Dec 15 00:08:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy