Magnesium in PDB 6te0: Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3

The binding sites of Magnesium atom in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 (pdb code 6te0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3, PDB code: 6te0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:61.4 occ:1.00 O2B C:ATP601 1.7 42.2 1.0 OG1 C:THR191 2.1 33.5 1.0 O3G C:ATP601 2.3 42.2 1.0 PB C:ATP601 3.0 42.2 1.0 HE22 C:GLN223 3.2 34.8 1.0 OD1 C:ASP284 3.2 36.2 1.0 OD2 C:ASP284 3.4 36.2 1.0 CB C:THR191 3.4 33.5 1.0 PG C:ATP601 3.5 42.2 1.0 NE2 C:GLN223 3.6 34.8 1.0 O3B C:ATP601 3.6 42.2 1.0 HB C:THR191 3.6 33.5 1.0 O1B C:ATP601 3.7 42.2 1.0 CG C:ASP284 3.7 36.2 1.0 HE21 C:GLN223 3.8 34.8 1.0 HG21 C:THR191 3.8 33.5 1.0 H C:THR191 3.8 33.5 1.0 O1G C:ATP601 3.9 42.2 1.0 O1A C:ATP601 4.1 42.2 1.0 CG2 C:THR191 4.2 33.5 1.0 O3A C:ATP601 4.2 42.2 1.0 HE3 C:LYS190 4.3 33.2 1.0 CD C:GLN223 4.3 34.8 1.0 HB2 C:LYS190 4.4 33.2 1.0 N C:THR191 4.4 33.5 1.0 CA C:THR191 4.5 33.5 1.0 HG23 C:THR191 4.5 33.5 1.0 OE1 C:GLN223 4.6 34.8 1.0 HA C:THR191 4.7 33.5 1.0 PA C:ATP601 4.7 42.2 1.0 O2G C:ATP601 4.8 42.2 1.0 HD13 C:ILE341 4.9 23.4 1.0 HG21 C:ILE341 5.0 23.4 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:52.8 occ:1.00 PB A:ATP601 1.4 38.2 1.0 O2B A:ATP601 1.4 38.2 1.0 O1G A:ATP601 1.8 38.2 1.0 O3B A:ATP601 1.9 38.2 1.0 O1B A:ATP601 2.0 38.2 1.0 PG A:ATP601 2.1 38.2 1.0 OG1 A:THR191 2.2 34.2 1.0 O3G A:ATP601 2.5 38.2 1.0 O3A A:ATP601 3.0 38.2 1.0 HE22 A:GLN223 3.1 33.0 1.0 CB A:THR191 3.4 34.2 1.0 HB A:THR191 3.5 34.2 1.0 H A:THR191 3.5 34.2 1.0 O2G A:ATP601 3.5 38.2 1.0 NE2 A:GLN223 3.7 33.0 1.0 HE21 A:GLN223 3.8 33.0 1.0 PA A:ATP601 4.0 38.2 1.0 O1A A:ATP601 4.0 38.2 1.0 HE2 A:LYS190 4.0 32.8 1.0 HG21 A:THR191 4.1 34.2 1.0 HB2 A:LYS190 4.1 32.8 1.0 N A:THR191 4.2 34.2 1.0 CG2 A:THR191 4.3 34.2 1.0 CA A:THR191 4.4 34.2 1.0 O2A A:ATP601 4.5 38.2 1.0 OD2 A:ASP284 4.5 32.1 1.0 H A:GLN187 4.6 34.8 1.0 HA A:THR191 4.7 34.2 1.0 OD1 A:ASP284 4.7 32.1 1.0 HG23 A:THR191 4.7 34.2 1.0 H A:LYS190 4.9 32.8 1.0 HZ1 A:LYS190 4.9 32.8 1.0 CE A:LYS190 4.9 32.8 1.0 CD A:GLN223 4.9 33.0 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:51.6 occ:1.00 O2B B:ATP601 1.8 48.0 1.0 O1G B:ATP601 2.0 48.0 1.0 OG1 B:THR191 2.1 37.0 1.0 O3G B:ATP601 2.4 48.0 1.0 PG B:ATP601 2.6 48.0 1.0 PB B:ATP601 3.1 48.0 1.0 HB B:THR191 3.2 37.0 1.0 CB B:THR191 3.2 37.0 1.0 O3B B:ATP601 3.3 48.0 1.0 HG21 B:THR191 3.8 37.0 1.0 O3A B:ATP601 3.8 48.0 1.0 H B:THR191 3.8 37.0 1.0 O2G B:ATP601 4.0 48.0 1.0 CG2 B:THR191 4.1 37.0 1.0 N B:THR191 4.2 37.0 1.0 O1A B:ATP601 4.3 48.0 1.0 HB2 B:LYS190 4.3 37.5 1.0 CA B:THR191 4.3 37.0 1.0 O1B B:ATP601 4.4 48.0 1.0 HE2 B:LYS190 4.4 37.5 1.0 PA B:ATP601 4.4 48.0 1.0 OD1 B:ASP284 4.6 33.5 1.0 HG23 B:THR191 4.6 37.0 1.0 HE22 B:GLN223 4.7 36.0 1.0 HA B:THR191 4.7 37.0 1.0 O2A B:ATP601 4.7 48.0 1.0 OD2 B:ASP284 4.8 33.5 1.0 HG22 B:THR191 4.8 37.0 1.0 OE1 B:GLN223 4.8 36.0 1.0 NE2 B:GLN223 4.8 36.0 1.0 CD B:GLN223 4.9 36.0 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:67.6 occ:1.00 HG21 F:THR174 1.5 57.7 1.0 OG1 F:THR174 2.0 57.7 1.0 CG2 F:THR174 2.1 57.7 1.0 HG23 F:THR174 2.4 57.7 1.0 CB F:THR174 2.4 57.7 1.0 O3B F:ADP601 2.5 57.1 1.0 HG1 F:THR174 2.5 57.7 1.0 HB F:THR174 2.8 57.7 1.0 OE2 F:GLU203 2.8 49.1 1.0 OE1 F:GLU203 3.0 49.1 1.0 HG22 F:THR174 3.0 57.7 1.0 CD F:GLU203 3.2 49.1 1.0 O2A F:ADP601 3.7 57.1 1.0 PB F:ADP601 3.7 57.1 1.0 HH11 F:ARG200 3.8 43.6 1.0 CA F:THR174 3.8 57.7 1.0 HA F:THR174 4.0 57.7 1.0 O1B F:ADP601 4.0 57.1 1.0 OD2 F:ASP266 4.1 47.5 1.0 HH12 F:ARG200 4.1 43.6 1.0 NH1 F:ARG200 4.2 43.6 1.0 HH11 B:ARG388 4.3 48.3 1.0 HG3 F:GLU199 4.3 46.5 1.0 H F:THR174 4.4 57.7 1.0 N F:THR174 4.6 57.7 1.0 O3A F:ADP601 4.6 57.1 1.0 HH12 B:ARG388 4.6 48.3 1.0 PA F:ADP601 4.6 57.1 1.0 OE2 F:GLU199 4.7 46.5 1.0 OD1 F:ASP266 4.7 47.5 1.0 NH1 B:ARG388 4.7 48.3 1.0 CG F:GLU203 4.7 49.1 1.0 CG F:ASP266 4.8 47.5 1.0 C F:THR174 4.8 57.7 1.0 HE3 F:LYS173 4.9 51.9 1.0 O2B F:ADP601 4.9 57.1 1.0 HG3 F:LYS173 4.9 51.9 1.0 HD2 F:ARG200 4.9 43.6 1.0 HG2 F:GLU203 4.9 49.1 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Euglena Gracilis Mitochondrial Atp Synthase, Oscp/F1/C-Ring, Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:33.8 occ:1.00 O2B E:ATP601 1.7 42.5 1.0 OG1 E:THR174 2.1 37.3 1.0 PB E:ATP601 2.2 42.5 1.0 O1B E:ATP601 2.2 42.5 1.0 O3G E:ATP601 2.7 42.5 1.0 OE1 E:GLU199 3.1 35.0 1.0 O3B E:ATP601 3.1 42.5 1.0 PG E:ATP601 3.2 42.5 1.0 O1G E:ATP601 3.2 42.5 1.0 CB E:THR174 3.3 37.3 1.0 HH12 E:ARG200 3.3 33.0 1.0 HB E:THR174 3.4 37.3 1.0 OE2 E:GLU203 3.4 38.9 1.0 O3A E:ATP601 3.6 42.5 1.0 HH11 E:ARG200 3.6 33.0 1.0 HG21 E:THR174 3.6 37.3 1.0 NH1 E:ARG200 3.8 33.0 1.0 H E:THR174 3.9 37.3 1.0 CD E:GLU199 3.9 35.0 1.0 O1A E:ATP601 4.0 42.5 1.0 OD2 E:ASP266 4.0 36.7 1.0 CG2 E:THR174 4.0 37.3 1.0 OE1 E:GLU203 4.1 38.9 1.0 CD E:GLU203 4.2 38.9 1.0 PA E:ATP601 4.2 42.5 1.0 OE2 E:GLU199 4.3 35.0 1.0 HE2 E:LYS173 4.3 37.3 1.0 HG3 E:LYS173 4.3 37.3 1.0 CA E:THR174 4.4 37.3 1.0 HG23 E:THR174 4.4 37.3 1.0 N E:THR174 4.4 37.3 1.0 O2A E:ATP601 4.5 42.5 1.0 OD1 E:ASP266 4.5 36.7 1.0 HH22 A:ARG388 4.6 36.1 1.0 HA E:THR174 4.6 37.3 1.0 O2G E:ATP601 4.7 42.5 1.0 HZ2 E:LYS173 4.7 37.3 1.0 CG E:ASP266 4.7 36.7 1.0 HG2 E:LYS173 4.7 37.3 1.0 HG22 E:THR174 4.8 37.3 1.0 HG3 E:GLU199 4.9 35.0 1.0 CG E:LYS173 5.0 37.3 1.0

A.Muhleip, S.E.Mccomas, A.Amunts. Structure of A Mitochondrial Atp Synthase with Bound Native Cardiolipin. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31738165
DOI: 10.7554/ELIFE.51179