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Magnesium in PDB 6ted: Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1

Enzymatic activity of Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1

All present enzymatic activity of Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1:
2.7.7.6;

Other elements in 6ted:

The structure of Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1 also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1 (pdb code 6ted). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1, PDB code: 6ted:

Magnesium binding site 1 out of 1 in 6ted

Go back to Magnesium Binding Sites List in 6ted
Magnesium binding site 1 out of 1 in the Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Complete, Activated Transcription Complex Pol II-Dsif- Paf-SPT6 Uncovers Allosteric Elongation Activation By RTF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2003

b:19.8
occ:1.00
O3' P:U46 2.1 38.4 1.0
OD1 A:ASP497 2.2 11.0 1.0
OD1 A:ASP495 2.7 9.4 1.0
CG A:ASP497 2.9 11.0 1.0
OD2 A:ASP497 2.9 11.0 1.0
OD1 A:ASP499 3.3 14.4 1.0
C3' P:U46 3.4 38.4 1.0
CB A:ASP495 3.5 9.4 1.0
CG A:ASP495 3.5 9.4 1.0
OD2 A:ASP499 3.5 14.4 1.0
CG A:ASP499 3.8 14.4 1.0
C4' P:U46 3.9 38.4 1.0
C5' P:U46 4.2 38.4 1.0
O2' P:U46 4.3 38.4 1.0
CB A:ASP497 4.3 11.0 1.0
C2' P:U46 4.4 38.4 1.0
OD2 A:ASP495 4.7 9.4 1.0
N A:ASP497 4.8 11.0 1.0
CA A:ASP495 4.8 9.4 1.0
O A:ASP497 4.8 11.0 1.0
CA A:ASP497 4.9 11.0 1.0
C A:ASP497 4.9 11.0 1.0

Reference:

S.M.Vos, L.Farnung, A.Linden, H.Urlaub, P.Cramer. Structure of Complete Pol II-Dsif-Paf-SPT6 Transcription Complex Reveals RTF1 Allosteric Activation. Nat.Struct.Mol.Biol. V. 27 668 2020.
ISSN: ESSN 1545-9985
PubMed: 32541898
DOI: 10.1038/S41594-020-0437-1
Page generated: Tue Oct 1 18:51:45 2024

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