Magnesium in PDB 6teo: Crystal Structure of A Yeast SNU114-PRP8 Complex

The structure of Crystal Structure of A Yeast SNU114-PRP8 Complex, PDB code: 6teo was solved by O.Ganichkin, J.Jia, B.Loll, E.Absmeier, M.C.Wahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.50 / 3.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	173.110, 158.590, 110.700, 90.00, 116.54, 90.00
R / Rfree (%)	23 / 27.1

The binding sites of Magnesium atom in the Crystal Structure of A Yeast SNU114-PRP8 Complex (pdb code 6teo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Yeast SNU114-PRP8 Complex, PDB code: 6teo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Yeast SNU114-PRP8 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Yeast SNU114-PRP8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:80.4 occ:1.00 N A:SER190 1.9 79.3 1.0 OG A:SER190 1.9 85.9 1.0 O A:HOH1201 2.1 78.3 1.0 OD2 A:ASP179 2.1 83.2 1.0 CB A:SER190 2.4 83.8 1.0 CA A:SER190 2.5 83.4 1.0 OG1 A:THR147 2.6 86.6 1.0 C A:LEU189 3.0 72.0 1.0 CG A:ASP179 3.1 88.0 1.0 O2G A:GTP1102 3.2 77.0 1.0 O2B A:GTP1102 3.3 69.1 1.0 OD1 A:ASP179 3.3 90.0 1.0 O3B A:GTP1102 3.6 72.8 1.0 CA A:LEU189 3.6 69.6 1.0 PG A:GTP1102 3.7 78.4 1.0 CB A:THR147 3.7 78.9 1.0 O1G A:GTP1102 3.8 83.1 1.0 O2A A:GTP1102 3.8 87.0 1.0 C A:SER190 3.9 81.6 1.0 O A:LEU189 3.9 77.4 1.0 PB A:GTP1102 4.1 76.7 1.0 CG2 A:THR147 4.2 76.0 1.0 O A:SER190 4.4 77.4 1.0 CB A:ASP179 4.4 82.8 1.0 N A:LEU189 4.6 68.6 1.0 CB A:LEU189 4.6 76.5 1.0 N A:ILE191 4.9 84.8 1.0 O3A A:GTP1102 5.0 77.9 1.0 PA A:GTP1102 5.0 77.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Yeast SNU114-PRP8 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Yeast SNU114-PRP8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1103 b:69.5 occ:1.00 OG1 C:THR147 2.1 68.2 1.0 O C:HOH1202 2.1 72.3 1.0 O2B C:GTP1102 2.1 54.0 1.0 OG C:SER190 2.1 72.9 1.0 O2G C:GTP1102 2.2 69.8 1.0 CB C:SER190 3.0 74.7 1.0 PG C:GTP1102 3.1 68.2 1.0 PB C:GTP1102 3.1 73.6 1.0 CB C:THR147 3.1 69.8 1.0 O3B C:GTP1102 3.1 66.4 1.0 O1G C:GTP1102 3.7 68.0 1.0 N C:SER190 3.7 74.5 1.0 OD2 C:ASP179 3.8 81.5 1.0 N C:THR147 3.9 68.6 1.0 O1B C:GTP1102 4.0 72.3 1.0 CA C:SER190 4.0 72.4 1.0 O2A C:GTP1102 4.0 68.9 1.0 OD2 C:ASP214 4.0 79.8 1.0 CA C:THR147 4.1 67.3 1.0 CG2 C:THR147 4.2 72.0 1.0 NZ C:LYS146 4.2 65.4 1.0 OD1 C:ASP179 4.2 84.1 1.0 O3A C:GTP1102 4.4 65.4 1.0 OD1 C:ASP214 4.4 79.4 1.0 O3G C:GTP1102 4.4 72.2 1.0 CG C:LYS146 4.5 66.5 1.0 CG C:ASP179 4.5 82.0 1.0 CG C:ASP214 4.6 83.8 1.0 O C:ALA215 4.6 74.4 1.0 PA C:GTP1102 4.7 61.3 1.0 C C:LEU189 4.9 72.1 1.0

J.Jia, O.Ganichkin, M.Preussner, B.Loll, E.Absmeier, F.Heyd, M.C.Wahl. Crystal Structure of A Yeast SNU114-PRP8 Complex To Be Published.