Magnesium in PDB 6tle: Human EG5 Motor Domain Mutant E344K
Protein crystallography data
The structure of Human EG5 Motor Domain Mutant E344K, PDB code: 6tle
was solved by
I.Garcia-Saez,
D.A.Skoufias,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.07 /
1.75
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.93,
47.15,
85.5,
93.91,
101.17,
109.23
|
R / Rfree (%)
|
20.1 /
23.5
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Human EG5 Motor Domain Mutant E344K
(pdb code 6tle). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Human EG5 Motor Domain Mutant E344K, PDB code: 6tle:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 6tle
Go back to
Magnesium Binding Sites List in 6tle
Magnesium binding site 1 out
of 2 in the Human EG5 Motor Domain Mutant E344K
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Human EG5 Motor Domain Mutant E344K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:17.8
occ:1.00
|
OG1
|
A:THR112
|
2.1
|
16.1
|
1.0
|
O3B
|
A:ADP402
|
2.1
|
15.2
|
1.0
|
O
|
A:HOH597
|
2.1
|
17.2
|
1.0
|
O
|
A:HOH613
|
2.1
|
13.4
|
1.0
|
O
|
A:HOH595
|
2.1
|
13.2
|
1.0
|
O
|
A:HOH668
|
2.2
|
16.4
|
1.0
|
CB
|
A:THR112
|
3.2
|
16.8
|
1.0
|
PB
|
A:ADP402
|
3.3
|
14.9
|
1.0
|
O1B
|
A:ADP402
|
3.5
|
15.7
|
1.0
|
N
|
A:THR112
|
3.9
|
15.6
|
1.0
|
O
|
A:HOH728
|
4.1
|
23.8
|
1.0
|
O1A
|
A:ADP402
|
4.1
|
33.0
|
1.0
|
OD2
|
A:ASP265
|
4.1
|
17.2
|
1.0
|
CA
|
A:THR112
|
4.1
|
17.5
|
1.0
|
CG2
|
A:THR112
|
4.2
|
16.6
|
1.0
|
O
|
A:HOH786
|
4.2
|
30.1
|
1.0
|
O
|
A:HOH639
|
4.2
|
16.2
|
1.0
|
O3A
|
A:ADP402
|
4.3
|
17.1
|
1.0
|
OD1
|
A:ASP265
|
4.3
|
19.2
|
1.0
|
O2B
|
A:ADP402
|
4.4
|
14.2
|
1.0
|
PA
|
A:ADP402
|
4.5
|
19.2
|
1.0
|
O
|
A:HOH646
|
4.6
|
15.7
|
1.0
|
O2A
|
A:ADP402
|
4.6
|
18.9
|
1.0
|
CG
|
A:ASP265
|
4.6
|
18.9
|
1.0
|
O
|
A:HOH566
|
4.6
|
20.3
|
1.0
|
OG
|
A:SER232
|
4.7
|
24.8
|
1.0
|
O
|
A:HOH792
|
4.8
|
52.2
|
1.0
|
CB
|
A:LYS111
|
4.9
|
12.1
|
1.0
|
CE
|
A:LYS111
|
5.0
|
12.6
|
1.0
|
C
|
A:LYS111
|
5.0
|
15.8
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 6tle
Go back to
Magnesium Binding Sites List in 6tle
Magnesium binding site 2 out
of 2 in the Human EG5 Motor Domain Mutant E344K
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Human EG5 Motor Domain Mutant E344K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:20.5
occ:1.00
|
O3B
|
B:ADP402
|
2.1
|
19.4
|
1.0
|
OG1
|
B:THR112
|
2.1
|
20.2
|
1.0
|
O
|
B:HOH568
|
2.1
|
15.5
|
1.0
|
O
|
B:HOH594
|
2.1
|
23.8
|
1.0
|
O
|
B:HOH626
|
2.2
|
18.9
|
1.0
|
O
|
B:HOH694
|
2.2
|
24.6
|
1.0
|
CB
|
B:THR112
|
3.2
|
25.2
|
1.0
|
PB
|
B:ADP402
|
3.3
|
18.9
|
1.0
|
O2B
|
B:ADP402
|
3.5
|
19.4
|
1.0
|
N
|
B:THR112
|
3.9
|
19.3
|
1.0
|
OD2
|
B:ASP265
|
4.1
|
22.1
|
1.0
|
O
|
B:HOH747
|
4.1
|
22.4
|
1.0
|
O2A
|
B:ADP402
|
4.1
|
30.0
|
1.0
|
CA
|
B:THR112
|
4.1
|
23.9
|
1.0
|
CG2
|
B:THR112
|
4.2
|
25.8
|
1.0
|
OD1
|
B:ASP265
|
4.2
|
21.1
|
1.0
|
O1B
|
B:ADP402
|
4.3
|
17.8
|
1.0
|
O
|
B:HOH617
|
4.3
|
21.4
|
1.0
|
O3A
|
B:ADP402
|
4.4
|
21.1
|
1.0
|
PA
|
B:ADP402
|
4.5
|
23.9
|
1.0
|
O
|
B:HOH661
|
4.5
|
18.8
|
1.0
|
O1A
|
B:ADP402
|
4.5
|
26.0
|
1.0
|
O
|
B:HOH602
|
4.6
|
25.9
|
1.0
|
CG
|
B:ASP265
|
4.6
|
23.0
|
1.0
|
O
|
B:HOH775
|
4.7
|
36.5
|
1.0
|
CB
|
B:LYS111
|
4.8
|
14.2
|
1.0
|
CE
|
B:LYS111
|
4.9
|
16.3
|
1.0
|
OG
|
B:SER232
|
4.9
|
30.7
|
1.0
|
C
|
B:LYS111
|
5.0
|
18.7
|
1.0
|
|
Reference:
I.Garcia-Saez,
D.A.Skoufias.
Human EG5 Motor Domain Mutant E344K To Be Published.
Page generated: Sun Jul 11 14:57:10 2021
|