Magnesium in PDB 6tmf: Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex

The structure of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex also contains other interesting chemical elements:

Zinc	(Zn)	4 atoms
Iron	(Fe)	8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Magnesium atom in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex (pdb code 6tmf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 29 binding sites of Magnesium where determined in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex, PDB code: 6tmf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1501 b:12.5 occ:1.00 OP1 A:G16 2.1 16.5 1.0 P A:G16 3.6 16.5 1.0 O2' A:G509 3.9 16.5 1.0 OP2 A:U503 4.2 16.5 1.0 N6 A:A515 4.2 16.5 1.0 N1 A:A515 4.3 16.5 1.0 OP2 A:G16 4.3 16.5 1.0 N3 A:G509 4.3 16.5 1.0 O3' A:U15 4.4 16.5 1.0 O5' A:G16 4.5 16.5 1.0 N2 A:G509 4.6 16.5 1.0 O4' A:G510 4.7 16.5 1.0 C1' A:G510 4.8 16.5 1.0 C6 A:A515 4.8 16.5 1.0 C5' A:G16 4.8 16.5 1.0 C2' A:G509 4.8 16.5 1.0 N6 A:A505 4.9 16.5 1.0 O2' A:G510 4.9 16.5 1.0 C2 A:G509 5.0 16.5 1.0 C1' A:G509 5.0 16.5 1.0

Magnesium binding site 2 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1502 b:17.0 occ:1.00 OP1 A:C27 2.4 16.5 1.0 P A:C27 3.5 16.5 1.0 OP2 A:C27 3.9 16.5 1.0 O5' A:C27 4.0 16.5 1.0 OP2 A:U28 4.4 16.5 1.0 C5' A:C27 4.5 16.5 1.0 O4' A:A350 4.8 16.5 1.0 O3' A:A26 4.9 16.5 1.0

Magnesium binding site 3 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1503 b:16.8 occ:1.00 OP1 A:U91 3.5 16.5 1.0 O2' A:A291 3.9 16.5 1.0 O4' A:A43 4.2 14.7 1.0 O5' A:A43 4.3 14.7 1.0 OP1 A:C41 4.4 16.5 1.0 P A:U91 4.4 16.5 1.0 OP1 A:G42 4.5 16.5 1.0 OP2 A:U91 4.6 16.5 1.0 O4' A:G292 4.6 16.5 1.0 N3 A:A291 4.6 16.5 1.0 OP1 A:A43 4.8 14.7 1.0 OP2 A:C92 4.8 16.5 1.0 O5' A:U91 4.8 16.5 1.0 C2' A:A291 4.8 16.5 1.0 C4' A:G292 4.9 16.5 1.0

Magnesium binding site 4 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1504 b:17.4 occ:1.00 OP2 A:A47 1.9 16.5 1.0 P A:A47 3.2 16.5 1.0 O3' A:A46 3.8 16.4 1.0 OP1 A:C44 4.0 17.5 1.0 OP1 A:A47 4.0 16.5 1.0 OP2 A:A43 4.2 14.7 1.0 O5' A:A47 4.4 16.5 1.0 P A:C44 4.7 17.5 1.0 O2' A:A46 4.7 16.4 1.0 O3' A:G42 4.8 16.5 1.0 C3' A:A46 4.8 16.4 1.0 OP2 A:C44 4.8 17.5 1.0 O3' A:A43 4.8 14.7 1.0 O2' A:G42 4.9 16.5 1.0 N7 A:G48 5.0 16.5 1.0 C5' A:A47 5.0 16.5 1.0

Magnesium binding site 5 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1505 b:14.1 occ:1.00 O6 A:G816 2.1 16.5 1.0 OP2 A:G805 2.3 16.5 1.0 C6 A:G816 3.1 16.5 1.0 N7 A:G816 3.4 16.5 1.0 C5 A:G816 3.6 16.5 1.0 P A:G805 3.7 16.5 1.0 N7 A:G805 4.0 16.5 1.0 O5' A:G805 4.0 16.5 1.0 C8 A:G805 4.2 16.5 1.0 OP2 A:C815 4.2 16.5 1.0 N1 A:G816 4.3 16.5 1.0 OP1 A:G805 4.5 16.5 1.0 C8 A:G816 4.6 16.5 1.0 C5 A:C815 4.7 16.5 1.0 O3' A:C804 4.8 16.5 1.0 C3' A:C804 4.9 16.5 1.0 C4 A:G816 4.9 16.5 1.0 O5' A:C804 5.0 16.5 1.0

Magnesium binding site 6 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1506 b:11.6 occ:1.00 OP1 A:C17 2.5 16.5 1.0 OP2 A:G832 2.7 16.5 1.0 O2' A:U831 2.9 16.5 1.0 O2 A:U503 3.1 16.5 1.0 O3' A:U831 3.3 16.5 1.0 O2' A:U503 3.4 16.5 1.0 P A:G832 3.6 16.5 1.0 C5' A:C17 3.7 16.5 1.0 P A:C17 3.9 16.5 1.0 C1' A:U503 3.9 16.5 1.0 C2' A:U831 4.0 16.5 1.0 C2 A:U503 4.0 16.5 1.0 O5' A:C17 4.1 16.5 1.0 C3' A:U831 4.2 16.5 1.0 C2' A:U503 4.2 16.5 1.0 N1 A:U503 4.4 16.5 1.0 O5' A:G832 4.5 16.5 1.0 C1' A:U831 4.7 16.5 1.0 OP1 A:G832 4.7 16.5 1.0 C5' A:G832 4.8 16.5 1.0 OD1 O:ASP27 4.8 14.5 1.0 O3' A:G16 4.8 16.5 1.0 OP2 A:C17 4.8 16.5 1.0 O4' A:U503 4.9 16.5 1.0

Magnesium binding site 7 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1507 b:13.1 occ:1.00 OP1 A:A737 2.1 18.2 1.0 OP1 A:A725 2.2 12.2 1.0 P A:A737 3.4 18.2 1.0 P A:A725 3.5 12.2 1.0 O2 A:C1467 3.6 16.5 1.0 OP2 A:A737 4.0 18.2 1.0 N2 A:G1460 4.1 16.5 1.0 OP2 A:A725 4.1 12.2 1.0 O2' A:C1467 4.2 16.5 1.0 O4' A:U1468 4.3 16.5 1.0 O5' A:A737 4.3 18.2 1.0 O5' A:A725 4.3 12.2 1.0 C5' A:A737 4.4 18.2 1.0 OP2 A:C726 4.5 13.7 1.0 O3' A:U736 4.5 20.2 1.0 O3' A:A724 4.6 10.8 1.0 C5' A:A725 4.6 12.2 1.0 C1' A:U1468 4.6 16.5 1.0 C2 A:C1467 4.8 16.5 1.0 C2' A:C1467 4.9 16.5 1.0 C4' A:A737 4.9 18.2 1.0

Magnesium binding site 8 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1508 b:11.7 occ:1.00 OP1 A:C1467 2.5 16.5 1.0 OP1 A:G1454 2.6 16.5 1.0 O3' A:A1445 3.2 16.5 1.0 OP1 A:A1446 3.3 16.5 1.0 P A:C1467 3.6 16.5 1.0 P A:G1454 3.8 16.5 1.0 OP2 A:C1467 3.8 16.5 1.0 P A:A1446 3.9 16.5 1.0 O2' A:A1445 4.0 16.5 1.0 MG A:MG1509 4.2 11.5 1.0 C5' A:A1446 4.2 16.5 1.0 O3' A:C1466 4.3 16.5 1.0 O5' A:G1454 4.3 16.5 1.0 C3' A:A1445 4.3 16.5 1.0 OP2 A:G1454 4.4 16.5 1.0 C5' A:G1454 4.5 16.5 1.0 O5' A:A1446 4.6 16.5 1.0 C4' A:A1445 4.7 16.5 1.0 OP2 A:C1455 4.7 16.5 1.0 C2' A:A1445 4.8 16.5 1.0 O5' A:C1467 4.9 16.5 1.0

Magnesium binding site 9 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1509 b:11.5 occ:1.00 OP1 A:A1446 2.0 16.5 1.0 OP1 A:G1451 2.1 16.5 1.0 OP1 A:G1454 2.6 16.5 1.0 O3' A:A1453 3.1 16.5 1.0 P A:G1454 3.4 16.5 1.0 P A:A1446 3.4 16.5 1.0 P A:G1451 3.5 16.5 1.0 C5' A:G1454 4.0 16.5 1.0 OP1 A:G1450 4.1 16.5 1.0 C3' A:G1450 4.1 16.5 1.0 OP2 A:C1447 4.1 16.5 1.0 O5' A:A1446 4.1 16.5 1.0 OP2 A:A1446 4.2 16.5 1.0 MG A:MG1508 4.2 11.7 1.0 O5' A:G1454 4.2 16.5 1.0 O3' A:G1450 4.3 16.5 1.0 OP2 A:G1450 4.3 16.5 1.0 C5' A:G1451 4.3 16.5 1.0 OP2 A:G1451 4.3 16.5 1.0 C3' A:A1453 4.4 16.5 1.0 O5' A:G1451 4.4 16.5 1.0 O3' A:A1445 4.5 16.5 1.0 O2' A:U1452 4.5 15.3 1.0 O2' A:A1453 4.6 16.5 1.0 O2' A:G1450 4.6 16.5 1.0 OP2 A:G1454 4.6 16.5 1.0 P A:G1450 4.6 16.5 1.0 C5' A:A1446 4.7 16.5 1.0 C2' A:G1450 4.7 16.5 1.0 C4' A:A1453 4.8 16.5 1.0

Magnesium binding site 10 out of 29 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1510 b:12.7 occ:1.00 OP2 A:A1446 2.0 16.5 1.0 OP1 A:A1445 2.0 16.5 1.0 OP2 A:G1451 2.2 16.5 1.0 OP2 A:A1445 2.5 16.5 1.0 P A:A1445 2.6 16.5 1.0 P A:A1446 3.5 16.5 1.0 P A:G1451 3.5 16.5 1.0 O3' A:U1444 3.7 17.8 1.0 O3' A:G1450 3.8 16.5 1.0 O2' A:G1450 3.8 16.5 1.0 O2' A:U1444 3.8 17.8 1.0 O5' A:A1445 3.9 16.5 1.0 N7 A:A1446 4.0 16.5 1.0 O5' A:A1446 4.2 16.5 1.0 C3' A:A1445 4.3 16.5 1.0 O3' A:A1445 4.3 16.5 1.0 OP1 A:G1451 4.3 16.5 1.0 OP1 A:A1446 4.4 16.5 1.0 C8 A:A1446 4.4 16.5 1.0 C5' A:A1445 4.5 16.5 1.0 O5' A:G1451 4.6 16.5 1.0 C2' A:G1450 4.8 16.5 1.0 C3' A:U1444 4.8 17.8 1.0 C2' A:U1444 4.8 17.8 1.0 C3' A:G1450 4.9 16.5 1.0 C4' A:A1445 5.0 16.5 1.0

E.Nuerenberg Goloub, H.Kratzat, H.Heinemann, A.Heuer, P.Koetter, O.Berninghausen, T.Becker, R.Tampe, R.Beckmann. Molecular Analysis of the Ribosome Recycling Factor ABCE1 Bound to the 30S Post-Splitting Complex Embo J. 2020.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2019103788