Atomistry » Magnesium » PDB 6tfg-6trd » 6tmh
Atomistry »
  Magnesium »
    PDB 6tfg-6trd »
      6tmh »

Magnesium in PDB 6tmh: Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model

Enzymatic activity of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model

All present enzymatic activity of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model (pdb code 6tmh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model, PDB code: 6tmh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6tmh

Go back to Magnesium Binding Sites List in 6tmh
Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:25.8
occ:1.00
 OG1 A:THR227 1.9 29.7 1.0
O1B A:ATP601 2.1 29.0 1.0
O1G A:ATP601 2.3 29.0 1.0
CB A:THR227 3.2 29.7 1.0
HB A:THR227 3.3 29.7 1.0
H A:THR227 3.4 29.7 1.0
PB A:ATP601 3.5 29.0 1.0
PG A:ATP601 3.6 29.0 1.0
O3B A:ATP601 3.8 29.0 1.0
HG21 A:THR227 3.8 29.7 1.0
O1A A:ATP601 4.0 29.0 1.0
CG2 A:THR227 4.0 29.7 1.0
N A:THR227 4.1 29.7 1.0
HE21 A:GLN260 4.1 30.7 1.0
CA A:THR227 4.2 29.7 1.0
O2G A:ATP601 4.3 29.0 1.0
HB2 A:LYS226 4.3 28.5 1.0
O2B A:ATP601 4.4 29.0 1.0
HG23 A:THR227 4.4 29.7 1.0
HE22 A:GLN260 4.5 30.7 1.0
HA A:THR227 4.5 29.7 1.0
O3A A:ATP601 4.6 29.0 1.0
HE2 A:LYS226 4.6 28.5 1.0
NE2 A:GLN260 4.6 30.7 1.0
O3G A:ATP601 4.7 29.0 1.0
OD1 A:ASP321 4.7 34.6 1.0
PA A:ATP601 4.7 29.0 1.0
HG22 A:THR227 4.9 29.7 1.0
OD2 A:ASP321 4.9 34.6 1.0
O2A A:ATP601 5.0 29.0 1.0

Magnesium binding site 2 out of 5 in 6tmh

Go back to Magnesium Binding Sites List in 6tmh
Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:33.5
occ:1.00
 HG1 E:THR227 1.7 33.5 1.0
O1B E:ATP601 1.9 37.9 1.0
OG1 E:THR227 2.1 33.5 1.0
O2G E:ATP601 2.3 37.9 1.0
HE22 E:GLN260 2.5 34.1 1.0
HB E:THR227 3.1 33.5 1.0
CB E:THR227 3.2 33.5 1.0
H E:THR227 3.3 33.5 1.0
NE2 E:GLN260 3.3 34.1 1.0
PB E:ATP601 3.3 37.9 1.0
HE21 E:GLN260 3.5 34.1 1.0
PG E:ATP601 3.6 37.9 1.0
O3B E:ATP601 3.8 37.9 1.0
O1A E:ATP601 3.9 37.9 1.0
N E:THR227 3.9 33.5 1.0
HG21 E:THR227 4.0 33.5 1.0
HB2 E:LYS226 4.1 31.3 1.0
CA E:THR227 4.1 33.5 1.0
O2B E:ATP601 4.1 37.9 1.0
CG2 E:THR227 4.2 33.5 1.0
HE3 E:LYS226 4.2 31.3 1.0
O3A E:ATP601 4.4 37.9 1.0
CD E:GLN260 4.4 34.1 1.0
HA E:THR227 4.4 33.5 1.0
O1G E:ATP601 4.5 37.9 1.0
PA E:ATP601 4.5 37.9 1.0
O3G E:ATP601 4.6 37.9 1.0
O2A E:ATP601 4.6 37.9 1.0
OE1 E:GLN260 4.7 34.1 1.0
HG23 E:THR227 4.8 33.5 1.0
HG22 E:THR227 4.9 33.5 1.0
OD2 E:ASP321 4.9 32.2 1.0
OD1 E:ASP321 4.9 32.2 1.0
H E:LYS226 5.0 31.3 1.0

Magnesium binding site 3 out of 5 in 6tmh

Go back to Magnesium Binding Sites List in 6tmh
Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:20.9
occ:1.00
 OG1 C:THR227 1.9 27.6 1.0
O1G C:ATP601 2.2 29.6 1.0
O2B C:ATP601 2.3 29.6 1.0
CB C:THR227 3.1 27.6 1.0
HB C:THR227 3.2 27.6 1.0
H C:THR227 3.5 27.6 1.0
PG C:ATP601 3.5 29.6 1.0
PB C:ATP601 3.6 29.6 1.0
HG21 C:THR227 3.7 27.6 1.0
O3B C:ATP601 3.8 29.6 1.0
OD1 C:ASP321 3.9 28.9 1.0
CG2 C:THR227 3.9 27.6 1.0
O3G C:ATP601 4.1 29.6 1.0
N C:THR227 4.1 27.6 1.0
O3A C:ATP601 4.2 29.6 1.0
CA C:THR227 4.2 27.6 1.0
O1A C:ATP601 4.2 29.6 1.0
OD2 C:ASP321 4.3 28.9 1.0
HG23 C:THR227 4.3 27.6 1.0
CG C:ASP321 4.5 28.9 1.0
HB2 C:LYS226 4.5 27.1 1.0
HA C:THR227 4.6 27.6 1.0
O2G C:ATP601 4.6 29.6 1.0
HE2 C:LYS226 4.6 27.1 1.0
PA C:ATP601 4.7 29.6 1.0
HG22 C:THR227 4.7 27.6 1.0
O1B C:ATP601 4.8 29.6 1.0
HH C:TYR255 4.9 27.9 1.0
O2A C:ATP601 5.0 29.6 1.0

Magnesium binding site 4 out of 5 in 6tmh

Go back to Magnesium Binding Sites List in 6tmh
Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:24.6
occ:1.00
 O2B B:ADP601 1.8 31.6 1.0
HG1 B:THR234 2.0 30.1 1.0
OG1 B:THR234 2.3 30.1 1.0
O2A B:ADP601 3.3 31.6 1.0
PB B:ADP601 3.3 31.6 1.0
OE2 B:GLU263 3.5 31.6 1.0
CB B:THR234 3.6 30.1 1.0
HB B:THR234 3.7 30.1 1.0
H B:THR234 3.7 30.1 1.0
HH12 B:ARG260 4.0 29.5 1.0
O3B B:ADP601 4.1 31.6 1.0
O1B B:ADP601 4.1 31.6 1.0
O3A B:ADP601 4.1 31.6 1.0
HB2 B:LYS233 4.1 27.4 1.0
HH11 B:ARG260 4.2 29.5 1.0
NH1 B:ARG260 4.2 29.5 1.0
OD2 B:ASP335 4.2 27.9 1.0
HG21 B:THR234 4.2 30.1 1.0
CD B:GLU263 4.3 31.6 1.0
HE2 B:LYS233 4.3 27.4 1.0
N B:THR234 4.3 30.1 1.0
PA B:ADP601 4.3 31.6 1.0
OE1 B:GLU263 4.3 31.6 1.0
HD21 B:ASN336 4.3 25.4 1.0
CG2 B:THR234 4.5 30.1 1.0
CA B:THR234 4.5 30.1 1.0
HA B:THR234 4.7 30.1 1.0
HZ1 B:LYS233 4.7 27.4 1.0
HG23 B:THR234 4.8 30.1 1.0
HZ3 B:LYS233 4.8 27.4 1.0
HH21 C:ARG425 4.8 31.8 1.0
OD1 B:ASP335 4.9 27.9 1.0
CZ B:ARG260 4.9 29.5 1.0
CG B:ASP335 5.0 27.9 1.0

Magnesium binding site 5 out of 5 in 6tmh

Go back to Magnesium Binding Sites List in 6tmh
Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Toxoplasma Gondii Mitochondrial Atp Synthase Dimer, Oscp/F1/C-Ring Model within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:21.2
occ:1.00
 O2B D:ADP601 2.0 31.3 1.0
HG1 D:THR234 2.2 28.4 1.0
OG1 D:THR234 2.5 28.4 1.0
PB D:ADP601 3.4 31.3 1.0
O3B D:ADP601 3.7 31.3 1.0
CB D:THR234 3.9 28.4 1.0
O2A D:ADP601 3.9 31.3 1.0
HD21 D:ASN336 4.0 25.3 1.0
HZ2 D:LYS233 4.0 26.1 1.0
H D:THR234 4.0 28.4 1.0
OD1 D:ASP335 4.1 26.5 1.0
HB D:THR234 4.1 28.4 1.0
OD2 D:ASP335 4.2 26.5 1.0
OE2 D:GLU263 4.3 31.4 1.0
O1B D:ADP601 4.3 31.3 1.0
HB2 D:LYS233 4.3 26.1 1.0
O3A D:ADP601 4.3 31.3 1.0
HG21 D:THR234 4.5 28.4 1.0
N D:THR234 4.5 28.4 1.0
OD1 D:ASN336 4.6 25.3 1.0
HZ1 D:LYS233 4.6 26.1 1.0
HH12 D:ARG260 4.6 28.8 1.0
CG D:ASP335 4.6 26.5 1.0
NZ D:LYS233 4.7 26.1 1.0
CG2 D:THR234 4.7 28.4 1.0
CA D:THR234 4.7 28.4 1.0
ND2 D:ASN336 4.7 25.3 1.0
PA D:ADP601 4.8 31.3 1.0
HE3 D:LYS233 4.9 26.1 1.0
HA D:THR234 4.9 28.4 1.0
NH1 D:ARG260 4.9 28.8 1.0
HG23 D:THR234 4.9 28.4 1.0

Reference:

A.Muhleip, R.Kock Flygaard, P.Fernandes, A.Lacombe, J.Ovciarikova, L.Sheiner, A.Amunts. Atp Synthase Hexamer Assemblies Shape Cristae of Toxoplasma Mitochondria To Be Published.
Page generated: Tue Oct 1 19:01:12 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy