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Magnesium in PDB 6tqb: X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif

Enzymatic activity of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif

All present enzymatic activity of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif:
2.3.2.27;

Protein crystallography data

The structure of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif, PDB code: 6tqb was solved by O.Binas, J.-N.Tants, S.A.Peter, R.Janowski, E.Davydova, J.Braun, D.Niessing, H.Schwalbe, J.E.Weigand, A.Schlundt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.08 / 1.60
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.990, 86.990, 72.990, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 19.7

Other elements in 6tqb:

The structure of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif (pdb code 6tqb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif, PDB code: 6tqb:

Magnesium binding site 1 out of 1 in 6tqb

Go back to Magnesium Binding Sites List in 6tqb
Magnesium binding site 1 out of 1 in the X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg103

b:39.5
occ:1.00
 O2 B:U17 2.9 25.0 1.0
C2 B:A7 3.4 18.9 0.4
O2 B:U8 3.5 26.2 1.0
C1' B:U18 3.5 22.8 0.4
O B:HOH214 3.6 46.3 1.0
O4' B:U18 3.6 21.8 0.4
C1' B:U8 3.7 23.5 1.0
C2 B:A7 3.8 22.4 0.6
N1 B:U18 3.9 22.4 0.4
C2 B:U8 3.9 24.1 1.0
C1' B:U18 4.0 26.9 0.6
N3 B:A7 4.1 17.9 0.4
O2 B:U18 4.1 22.1 0.4
N3 B:A7 4.1 22.1 0.6
C2 B:U17 4.1 24.6 1.0
C2 B:U18 4.1 22.0 0.4
O4' B:U18 4.1 24.0 0.6
N1 B:U8 4.1 23.9 1.0
N1 B:A7 4.3 18.4 0.4
O4' B:U8 4.3 23.2 1.0
O1 B:EDO101 4.3 29.6 1.0
O2 B:U18 4.5 24.9 0.6
N1 B:U18 4.5 25.2 0.6
O2' B:U8 4.6 25.2 1.0
C6 B:U18 4.6 22.3 0.4
C2 B:U18 4.7 26.3 0.6
C2' B:U8 4.7 23.2 1.0
N1 B:A7 4.7 22.2 0.6
N3 B:U17 4.9 28.6 1.0
C2' B:U18 4.9 23.6 0.4
O2' B:U17 4.9 27.4 1.0
N3 B:U8 4.9 23.1 1.0
O B:HOH231 4.9 30.1 0.4
N3 B:U18 4.9 20.2 0.4
O2' B:U18 5.0 24.1 0.4
C4' B:U18 5.0 22.4 0.4

Reference:

R.Janowski, E.Davydova, A.Schlundt, D.Niessing. Structural Basis For the Recognition of (Linear and) Non-Linear Au-Rich Elements By Roquin To Be Published.
Page generated: Tue Oct 1 19:04:37 2024

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