Magnesium in PDB 6tqo: Rrn Anti-Termination Complex
Enzymatic activity of Rrn Anti-Termination Complex
All present enzymatic activity of Rrn Anti-Termination Complex:
2.7.7.6;
3.1.3.25;
Other elements in 6tqo:
The structure of Rrn Anti-Termination Complex also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Rrn Anti-Termination Complex
(pdb code 6tqo). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
Rrn Anti-Termination Complex, PDB code: 6tqo:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 6tqo
Go back to
Magnesium Binding Sites List in 6tqo
Magnesium binding site 1 out
of 3 in the Rrn Anti-Termination Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rrn Anti-Termination Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Mg301
b:0.6
occ:1.00
|
O
|
T:LEU86
|
1.9
|
0.5
|
1.0
|
OD1
|
T:ASP84
|
2.0
|
1.0
|
1.0
|
OE1
|
T:GLU67
|
2.1
|
0.6
|
1.0
|
OD2
|
T:ASP84
|
2.1
|
1.0
|
1.0
|
OE2
|
T:GLU67
|
2.1
|
0.6
|
1.0
|
CG
|
T:ASP84
|
2.2
|
1.0
|
1.0
|
CD
|
T:GLU67
|
2.3
|
0.6
|
1.0
|
C
|
T:LEU86
|
3.1
|
0.5
|
1.0
|
CB
|
T:ASP84
|
3.6
|
1.0
|
1.0
|
CG
|
T:GLU67
|
3.8
|
0.6
|
1.0
|
OD1
|
T:ASP212
|
3.8
|
0.6
|
1.0
|
N
|
T:ASP87
|
3.9
|
0.2
|
1.0
|
CA
|
T:ASP87
|
3.9
|
0.2
|
1.0
|
N
|
T:LEU86
|
4.1
|
0.5
|
1.0
|
CA
|
T:LEU86
|
4.1
|
0.5
|
1.0
|
CA
|
T:ASP84
|
4.4
|
1.0
|
1.0
|
CB
|
T:GLU67
|
4.6
|
0.6
|
1.0
|
CB
|
T:ASP87
|
4.6
|
0.2
|
1.0
|
CB
|
T:LEU86
|
4.7
|
0.5
|
1.0
|
C
|
T:ASP84
|
4.8
|
1.0
|
1.0
|
CG
|
T:ASP212
|
4.9
|
0.6
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 6tqo
Go back to
Magnesium Binding Sites List in 6tqo
Magnesium binding site 2 out
of 3 in the Rrn Anti-Termination Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rrn Anti-Termination Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg301
b:0.7
occ:1.00
|
OD1
|
S:ASP84
|
2.1
|
85.8
|
1.0
|
OD2
|
S:ASP84
|
2.1
|
85.8
|
1.0
|
OE1
|
S:GLU67
|
2.2
|
0.3
|
1.0
|
CG
|
S:ASP84
|
2.2
|
85.8
|
1.0
|
O
|
S:LEU86
|
2.5
|
87.3
|
1.0
|
CD
|
S:GLU67
|
2.8
|
0.3
|
1.0
|
OE2
|
S:GLU67
|
2.9
|
0.3
|
1.0
|
CB
|
S:ASP84
|
3.5
|
85.8
|
1.0
|
C
|
S:LEU86
|
3.7
|
87.3
|
1.0
|
CG
|
S:GLU67
|
4.1
|
0.3
|
1.0
|
CA
|
S:ASP84
|
4.2
|
85.8
|
1.0
|
OD1
|
S:ASP212
|
4.3
|
88.4
|
1.0
|
OD1
|
S:ASP87
|
4.3
|
88.5
|
1.0
|
CA
|
S:ASP87
|
4.4
|
88.5
|
1.0
|
N
|
S:ASP87
|
4.5
|
88.5
|
1.0
|
N
|
S:LEU86
|
4.5
|
87.3
|
1.0
|
CA
|
S:LEU86
|
4.7
|
87.3
|
1.0
|
C
|
S:ASP84
|
4.7
|
85.8
|
1.0
|
OD2
|
S:ASP44
|
4.8
|
98.8
|
1.0
|
CD
|
S:PRO85
|
4.8
|
87.4
|
1.0
|
N
|
S:PRO85
|
5.0
|
87.4
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 6tqo
Go back to
Magnesium Binding Sites List in 6tqo
Magnesium binding site 3 out
of 3 in the Rrn Anti-Termination Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rrn Anti-Termination Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Mg1503
b:95.3
occ:1.00
|
O3'
|
R:C85
|
2.0
|
0.6
|
1.0
|
OD1
|
Y:ASP462
|
2.0
|
83.3
|
1.0
|
OD1
|
Y:ASP460
|
2.1
|
80.5
|
1.0
|
OD2
|
Y:ASP460
|
2.1
|
80.5
|
1.0
|
OD1
|
Y:ASP464
|
2.1
|
82.8
|
1.0
|
OD2
|
Y:ASP462
|
2.1
|
83.3
|
1.0
|
OD2
|
Y:ASP464
|
2.1
|
82.8
|
1.0
|
CG
|
Y:ASP460
|
2.3
|
80.5
|
1.0
|
CG
|
Y:ASP462
|
2.3
|
83.3
|
1.0
|
CG
|
Y:ASP464
|
2.4
|
82.8
|
1.0
|
C3'
|
R:C85
|
3.4
|
0.6
|
1.0
|
CB
|
Y:ASP460
|
3.8
|
80.5
|
1.0
|
CB
|
Y:ASP462
|
3.9
|
83.3
|
1.0
|
CB
|
Y:ASP464
|
3.9
|
82.8
|
1.0
|
O2'
|
R:C85
|
3.9
|
0.6
|
1.0
|
C4'
|
R:C85
|
3.9
|
0.6
|
1.0
|
NH2
|
Y:ARG425
|
4.1
|
72.2
|
1.0
|
C2'
|
R:C85
|
4.2
|
0.6
|
1.0
|
C5'
|
R:C85
|
4.4
|
0.6
|
1.0
|
N
|
Y:ASP462
|
4.5
|
83.3
|
1.0
|
CA
|
Y:ASP460
|
4.6
|
80.5
|
1.0
|
O
|
Y:ASP460
|
4.7
|
80.5
|
1.0
|
N
|
Y:ASP460
|
4.7
|
80.5
|
1.0
|
CA
|
Y:ASP462
|
4.7
|
83.3
|
1.0
|
C
|
Y:ASP460
|
4.7
|
80.5
|
1.0
|
CA
|
Y:ASP464
|
4.7
|
82.8
|
1.0
|
N
|
Y:ASP464
|
4.8
|
82.8
|
1.0
|
|
Reference:
Y.H.Huang,
T.Hilal,
B.Loll,
J.Burger,
T.Mielke,
C.Bottcher,
N.Said,
M.C.Wahl.
Structure-Based Mechanisms of A Molecular Rna Polymerase/Chaperone Machine Required For Ribosome Biosynthesis. Mol.Cell V. 79 1024 2020.
ISSN: ISSN 1097-2765
PubMed: 32871103
DOI: 10.1016/J.MOLCEL.2020.08.010
Page generated: Mon Jan 25 15:12:56 2021
|