Magnesium in PDB 6tra: Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
All present enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6:
1.97.1.12;
Other elements in 6tra:
The structure of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
97;
Binding sites:
The binding sites of Magnesium atom in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
(pdb code 6tra). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 97 binding sites of Magnesium where determined in the
Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6, PDB code: 6tra:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 1 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:13.4
occ:1.00
|
MG
|
A:CL0801
|
0.0
|
13.4
|
1.0
|
NB
|
A:CL0801
|
2.0
|
13.4
|
1.0
|
ND
|
A:CL0801
|
2.0
|
13.4
|
1.0
|
NA
|
A:CL0801
|
2.1
|
13.4
|
1.0
|
NC
|
A:CL0801
|
2.1
|
13.4
|
1.0
|
NE2
|
A:HIS680
|
2.7
|
14.3
|
1.0
|
C4D
|
A:CL0801
|
2.9
|
13.4
|
1.0
|
C1B
|
A:CL0801
|
3.0
|
13.4
|
1.0
|
C4A
|
A:CL0801
|
3.0
|
13.4
|
1.0
|
C4B
|
A:CL0801
|
3.0
|
13.4
|
1.0
|
C1C
|
A:CL0801
|
3.1
|
13.4
|
1.0
|
C4C
|
A:CL0801
|
3.1
|
13.4
|
1.0
|
C1D
|
A:CL0801
|
3.1
|
13.4
|
1.0
|
C1A
|
A:CL0801
|
3.2
|
13.4
|
1.0
|
CE1
|
A:HIS680
|
3.4
|
14.3
|
1.0
|
CHB
|
A:CL0801
|
3.4
|
13.4
|
1.0
|
CHC
|
A:CL0801
|
3.4
|
13.4
|
1.0
|
CHA
|
A:CL0801
|
3.5
|
13.4
|
1.0
|
CHD
|
A:CL0801
|
3.5
|
13.4
|
1.0
|
CAB
|
B:CLA804
|
3.7
|
13.8
|
1.0
|
C3B
|
B:CLA804
|
3.9
|
13.8
|
1.0
|
CD2
|
A:HIS680
|
3.9
|
14.3
|
1.0
|
C4B
|
B:CLA804
|
4.2
|
13.8
|
1.0
|
C3D
|
A:CL0801
|
4.2
|
13.4
|
1.0
|
CHC
|
B:CLA804
|
4.3
|
13.8
|
1.0
|
C2B
|
A:CL0801
|
4.3
|
13.4
|
1.0
|
C3B
|
A:CL0801
|
4.3
|
13.4
|
1.0
|
C2C
|
A:CL0801
|
4.3
|
13.4
|
1.0
|
C2D
|
A:CL0801
|
4.3
|
13.4
|
1.0
|
C3C
|
A:CL0801
|
4.4
|
13.4
|
1.0
|
C3A
|
A:CL0801
|
4.4
|
13.4
|
1.0
|
C2A
|
A:CL0801
|
4.5
|
13.4
|
1.0
|
ND1
|
A:HIS680
|
4.6
|
14.3
|
1.0
|
C2B
|
B:CLA804
|
4.6
|
13.8
|
1.0
|
CBB
|
B:CLA804
|
4.6
|
13.8
|
1.0
|
CG
|
A:HIS680
|
4.9
|
14.3
|
1.0
|
CBD
|
A:CL0801
|
4.9
|
13.4
|
1.0
|
|
Magnesium binding site 2 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 2 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:15.7
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
15.7
|
1.0
|
NB
|
A:CLA802
|
2.0
|
15.7
|
1.0
|
ND
|
A:CLA802
|
2.0
|
15.7
|
1.0
|
NA
|
A:CLA802
|
2.1
|
15.7
|
1.0
|
NC
|
A:CLA802
|
2.1
|
15.7
|
1.0
|
SD
|
A:MET688
|
2.4
|
15.5
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
15.7
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
15.7
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
15.7
|
1.0
|
C4B
|
A:CLA802
|
3.1
|
15.7
|
1.0
|
C1C
|
A:CLA802
|
3.1
|
15.7
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
15.7
|
1.0
|
C1A
|
A:CLA802
|
3.1
|
15.7
|
1.0
|
C1D
|
A:CLA802
|
3.1
|
15.7
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
15.7
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
15.7
|
1.0
|
CHA
|
A:CLA802
|
3.5
|
15.7
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
15.7
|
1.0
|
CG
|
A:MET688
|
3.7
|
15.5
|
1.0
|
CE
|
A:MET688
|
3.7
|
15.5
|
1.0
|
NE1
|
B:TRP588
|
3.9
|
14.6
|
1.0
|
CZ2
|
B:TRP588
|
4.1
|
14.6
|
1.0
|
CB
|
A:MET688
|
4.1
|
15.5
|
1.0
|
C3D
|
A:CLA802
|
4.3
|
15.7
|
1.0
|
C2B
|
A:CLA802
|
4.3
|
15.7
|
1.0
|
C3B
|
A:CLA802
|
4.3
|
15.7
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
15.7
|
1.0
|
CE2
|
B:TRP588
|
4.3
|
14.6
|
1.0
|
C2D
|
A:CLA802
|
4.4
|
15.7
|
1.0
|
C3C
|
A:CLA802
|
4.4
|
15.7
|
1.0
|
C3A
|
A:CLA802
|
4.4
|
15.7
|
1.0
|
C2A
|
A:CLA802
|
4.4
|
15.7
|
1.0
|
CBD
|
A:CLA802
|
4.9
|
15.7
|
1.0
|
CMC
|
A:CLA854
|
5.0
|
15.1
|
1.0
|
|
Magnesium binding site 3 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 3 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:12.8
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
12.8
|
1.0
|
NB
|
A:CLA803
|
2.0
|
12.8
|
1.0
|
ND
|
A:CLA803
|
2.0
|
12.8
|
1.0
|
NC
|
A:CLA803
|
2.1
|
12.8
|
1.0
|
NA
|
A:CLA803
|
2.1
|
12.8
|
1.0
|
O
|
A:HOH944
|
2.3
|
11.7
|
1.0
|
C4D
|
A:CLA803
|
2.9
|
12.8
|
1.0
|
C1B
|
A:CLA803
|
3.0
|
12.8
|
1.0
|
C4B
|
A:CLA803
|
3.0
|
12.8
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
12.8
|
1.0
|
C1C
|
A:CLA803
|
3.1
|
12.8
|
1.0
|
C4C
|
A:CLA803
|
3.1
|
12.8
|
1.0
|
C1A
|
A:CLA803
|
3.1
|
12.8
|
1.0
|
C1D
|
A:CLA803
|
3.2
|
12.8
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
12.8
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
12.8
|
1.0
|
CHA
|
A:CLA803
|
3.5
|
12.8
|
1.0
|
CHD
|
A:CLA803
|
3.5
|
12.8
|
1.0
|
CBB
|
B:CLA805
|
3.6
|
12.9
|
1.0
|
CAB
|
B:CLA805
|
4.0
|
12.9
|
1.0
|
C2B
|
A:CLA803
|
4.2
|
12.8
|
1.0
|
C3B
|
A:CLA803
|
4.2
|
12.8
|
1.0
|
C3D
|
A:CLA803
|
4.3
|
12.8
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
12.8
|
1.0
|
C2D
|
A:CLA803
|
4.4
|
12.8
|
1.0
|
C3C
|
A:CLA803
|
4.4
|
12.8
|
1.0
|
C3A
|
A:CLA803
|
4.4
|
12.8
|
1.0
|
C2A
|
A:CLA803
|
4.5
|
12.8
|
1.0
|
CB
|
B:ALA664
|
4.5
|
12.7
|
1.0
|
OD1
|
A:ASN604
|
4.8
|
13.2
|
1.0
|
C3B
|
B:CLA805
|
4.8
|
12.9
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
12.8
|
1.0
|
ND2
|
A:ASN604
|
4.9
|
13.2
|
1.0
|
C2
|
A:CL0801
|
4.9
|
13.4
|
1.0
|
|
Magnesium binding site 4 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 4 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:18.9
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
18.9
|
1.0
|
NB
|
A:CLA804
|
2.0
|
18.9
|
1.0
|
ND
|
A:CLA804
|
2.0
|
18.9
|
1.0
|
NA
|
A:CLA804
|
2.1
|
18.9
|
1.0
|
NC
|
A:CLA804
|
2.1
|
18.9
|
1.0
|
NE2
|
A:HIS52
|
2.8
|
17.6
|
1.0
|
C4D
|
A:CLA804
|
2.9
|
18.9
|
1.0
|
C1B
|
A:CLA804
|
3.0
|
18.9
|
1.0
|
C4A
|
A:CLA804
|
3.0
|
18.9
|
1.0
|
C4B
|
A:CLA804
|
3.0
|
18.9
|
1.0
|
C1C
|
A:CLA804
|
3.1
|
18.9
|
1.0
|
C4C
|
A:CLA804
|
3.1
|
18.9
|
1.0
|
C1D
|
A:CLA804
|
3.1
|
18.9
|
1.0
|
C1A
|
A:CLA804
|
3.2
|
18.9
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
18.9
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
18.9
|
1.0
|
CHA
|
A:CLA804
|
3.5
|
18.9
|
1.0
|
CHD
|
A:CLA804
|
3.5
|
18.9
|
1.0
|
CG
|
J:PRO12
|
3.6
|
20.9
|
1.0
|
CE1
|
A:HIS52
|
3.6
|
17.6
|
1.0
|
CB
|
J:PRO12
|
3.7
|
20.9
|
1.0
|
CD2
|
A:HIS52
|
3.9
|
17.6
|
1.0
|
C3D
|
A:CLA804
|
4.3
|
18.9
|
1.0
|
C2B
|
A:CLA804
|
4.3
|
18.9
|
1.0
|
C3B
|
A:CLA804
|
4.3
|
18.9
|
1.0
|
C2C
|
A:CLA804
|
4.3
|
18.9
|
1.0
|
C2D
|
A:CLA804
|
4.4
|
18.9
|
1.0
|
C3C
|
A:CLA804
|
4.4
|
18.9
|
1.0
|
C3A
|
A:CLA804
|
4.4
|
18.9
|
1.0
|
C2A
|
A:CLA804
|
4.5
|
18.9
|
1.0
|
CD
|
J:PRO12
|
4.6
|
20.9
|
1.0
|
ND1
|
A:HIS52
|
4.8
|
17.6
|
1.0
|
CBD
|
A:CLA804
|
4.9
|
18.9
|
1.0
|
CG
|
A:HIS52
|
5.0
|
17.6
|
1.0
|
C29
|
J:BCR104
|
5.0
|
20.9
|
1.0
|
|
Magnesium binding site 5 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 5 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:17.2
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
17.2
|
1.0
|
NB
|
A:CLA805
|
2.0
|
17.2
|
1.0
|
ND
|
A:CLA805
|
2.0
|
17.2
|
1.0
|
NA
|
A:CLA805
|
2.1
|
17.2
|
1.0
|
NC
|
A:CLA805
|
2.1
|
17.2
|
1.0
|
NE2
|
A:HIS56
|
2.7
|
15.9
|
1.0
|
C4D
|
A:CLA805
|
2.9
|
17.2
|
1.0
|
C1B
|
A:CLA805
|
3.0
|
17.2
|
1.0
|
C4A
|
A:CLA805
|
3.0
|
17.2
|
1.0
|
C4B
|
A:CLA805
|
3.1
|
17.2
|
1.0
|
C1C
|
A:CLA805
|
3.1
|
17.2
|
1.0
|
C4C
|
A:CLA805
|
3.1
|
17.2
|
1.0
|
C1D
|
A:CLA805
|
3.1
|
17.2
|
1.0
|
C1A
|
A:CLA805
|
3.2
|
17.2
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
17.2
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
17.2
|
1.0
|
CHA
|
A:CLA805
|
3.5
|
17.2
|
1.0
|
CHD
|
A:CLA805
|
3.5
|
17.2
|
1.0
|
CE1
|
A:HIS56
|
3.6
|
15.9
|
1.0
|
CD2
|
A:HIS56
|
3.7
|
15.9
|
1.0
|
C7
|
A:CLA812
|
4.0
|
18.0
|
1.0
|
C6
|
A:CLA812
|
4.1
|
18.0
|
1.0
|
C3D
|
A:CLA805
|
4.3
|
17.2
|
1.0
|
C2B
|
A:CLA805
|
4.3
|
17.2
|
1.0
|
C3B
|
A:CLA805
|
4.3
|
17.2
|
1.0
|
C2C
|
A:CLA805
|
4.3
|
17.2
|
1.0
|
C2D
|
A:CLA805
|
4.3
|
17.2
|
1.0
|
C3C
|
A:CLA805
|
4.4
|
17.2
|
1.0
|
C3A
|
A:CLA805
|
4.4
|
17.2
|
1.0
|
C2A
|
A:CLA805
|
4.5
|
17.2
|
1.0
|
C10
|
A:CLA812
|
4.6
|
18.0
|
1.0
|
C8
|
A:CLA812
|
4.7
|
18.0
|
1.0
|
ND1
|
A:HIS56
|
4.7
|
15.9
|
1.0
|
C9
|
A:CLA812
|
4.8
|
18.0
|
1.0
|
CG
|
A:HIS56
|
4.9
|
15.9
|
1.0
|
CBD
|
A:CLA805
|
4.9
|
17.2
|
1.0
|
|
Magnesium binding site 6 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 6 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:15.2
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
15.2
|
1.0
|
NB
|
A:CLA806
|
2.0
|
15.2
|
1.0
|
ND
|
A:CLA806
|
2.0
|
15.2
|
1.0
|
NA
|
A:CLA806
|
2.1
|
15.2
|
1.0
|
NC
|
A:CLA806
|
2.1
|
15.2
|
1.0
|
NE2
|
A:HIS76
|
2.7
|
15.1
|
1.0
|
C4D
|
A:CLA806
|
2.9
|
15.2
|
1.0
|
C1B
|
A:CLA806
|
3.0
|
15.2
|
1.0
|
C4A
|
A:CLA806
|
3.0
|
15.2
|
1.0
|
C4B
|
A:CLA806
|
3.1
|
15.2
|
1.0
|
C1C
|
A:CLA806
|
3.1
|
15.2
|
1.0
|
C4C
|
A:CLA806
|
3.1
|
15.2
|
1.0
|
C1A
|
A:CLA806
|
3.1
|
15.2
|
1.0
|
C1D
|
A:CLA806
|
3.1
|
15.2
|
1.0
|
CMB
|
A:CLA831
|
3.2
|
15.3
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
15.2
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
15.2
|
1.0
|
CD2
|
A:HIS76
|
3.4
|
15.1
|
1.0
|
CHA
|
A:CLA806
|
3.5
|
15.2
|
1.0
|
CHD
|
A:CLA806
|
3.5
|
15.2
|
1.0
|
CE1
|
A:HIS76
|
3.6
|
15.1
|
1.0
|
C3D
|
A:CLA806
|
4.2
|
15.2
|
1.0
|
C2B
|
A:CLA806
|
4.3
|
15.2
|
1.0
|
C3B
|
A:CLA806
|
4.3
|
15.2
|
1.0
|
C2C
|
A:CLA806
|
4.3
|
15.2
|
1.0
|
C2D
|
A:CLA806
|
4.3
|
15.2
|
1.0
|
C3C
|
A:CLA806
|
4.4
|
15.2
|
1.0
|
C3A
|
A:CLA806
|
4.4
|
15.2
|
1.0
|
C2A
|
A:CLA806
|
4.4
|
15.2
|
1.0
|
CBB
|
A:CLA831
|
4.5
|
15.3
|
1.0
|
CG
|
A:HIS76
|
4.5
|
15.1
|
1.0
|
ND1
|
A:HIS76
|
4.6
|
15.1
|
1.0
|
C2B
|
A:CLA831
|
4.6
|
15.3
|
1.0
|
CG2
|
A:ILE72
|
4.7
|
15.8
|
1.0
|
CBD
|
A:CLA806
|
4.9
|
15.2
|
1.0
|
|
Magnesium binding site 7 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 7 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:14.7
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
14.7
|
1.0
|
NB
|
A:CLA807
|
2.0
|
14.7
|
1.0
|
ND
|
A:CLA807
|
2.0
|
14.7
|
1.0
|
NC
|
A:CLA807
|
2.1
|
14.7
|
1.0
|
NA
|
A:CLA807
|
2.1
|
14.7
|
1.0
|
NE2
|
A:HIS79
|
2.6
|
14.8
|
1.0
|
C4D
|
A:CLA807
|
2.9
|
14.7
|
1.0
|
C1B
|
A:CLA807
|
3.0
|
14.7
|
1.0
|
C4A
|
A:CLA807
|
3.0
|
14.7
|
1.0
|
C4B
|
A:CLA807
|
3.1
|
14.7
|
1.0
|
C1C
|
A:CLA807
|
3.1
|
14.7
|
1.0
|
C4C
|
A:CLA807
|
3.1
|
14.7
|
1.0
|
C1D
|
A:CLA807
|
3.1
|
14.7
|
1.0
|
C1A
|
A:CLA807
|
3.2
|
14.7
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
14.7
|
1.0
|
CE1
|
A:HIS79
|
3.4
|
14.8
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
14.7
|
1.0
|
CHA
|
A:CLA807
|
3.5
|
14.7
|
1.0
|
CHD
|
A:CLA807
|
3.5
|
14.7
|
1.0
|
CD2
|
A:HIS79
|
3.7
|
14.8
|
1.0
|
C15
|
A:CLA807
|
3.7
|
14.7
|
1.0
|
C16
|
A:CLA807
|
3.9
|
14.7
|
1.0
|
C3D
|
A:CLA807
|
4.2
|
14.7
|
1.0
|
C2B
|
A:CLA807
|
4.3
|
14.7
|
1.0
|
C3B
|
A:CLA807
|
4.3
|
14.7
|
1.0
|
C2C
|
A:CLA807
|
4.3
|
14.7
|
1.0
|
C2D
|
A:CLA807
|
4.3
|
14.7
|
1.0
|
C3C
|
A:CLA807
|
4.4
|
14.7
|
1.0
|
C3A
|
A:CLA807
|
4.4
|
14.7
|
1.0
|
C18
|
A:CLA807
|
4.4
|
14.7
|
1.0
|
C2A
|
A:CLA807
|
4.5
|
14.7
|
1.0
|
ND1
|
A:HIS79
|
4.6
|
14.8
|
1.0
|
C14
|
A:CLA807
|
4.7
|
14.7
|
1.0
|
C13
|
A:CLA807
|
4.8
|
14.7
|
1.0
|
C17
|
A:CLA807
|
4.8
|
14.7
|
1.0
|
CG
|
A:HIS79
|
4.8
|
14.8
|
1.0
|
CBD
|
A:CLA807
|
4.9
|
14.7
|
1.0
|
|
Magnesium binding site 8 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 8 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:19.6
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
19.6
|
1.0
|
NB
|
A:CLA808
|
2.0
|
19.6
|
1.0
|
ND
|
A:CLA808
|
2.0
|
19.6
|
1.0
|
NC
|
A:CLA808
|
2.1
|
19.6
|
1.0
|
NA
|
A:CLA808
|
2.1
|
19.6
|
1.0
|
NE2
|
A:HIS93
|
2.6
|
17.2
|
1.0
|
C4D
|
A:CLA808
|
2.9
|
19.6
|
1.0
|
C1B
|
A:CLA808
|
3.0
|
19.6
|
1.0
|
C4A
|
A:CLA808
|
3.0
|
19.6
|
1.0
|
C4B
|
A:CLA808
|
3.1
|
19.6
|
1.0
|
C1C
|
A:CLA808
|
3.1
|
19.6
|
1.0
|
CE1
|
A:HIS93
|
3.1
|
17.2
|
1.0
|
C4C
|
A:CLA808
|
3.1
|
19.6
|
1.0
|
C1A
|
A:CLA808
|
3.1
|
19.6
|
1.0
|
C1D
|
A:CLA808
|
3.2
|
19.6
|
1.0
|
CHB
|
A:CLA808
|
3.4
|
19.6
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
19.6
|
1.0
|
CHA
|
A:CLA808
|
3.5
|
19.6
|
1.0
|
CHD
|
A:CLA808
|
3.5
|
19.6
|
1.0
|
C15
|
A:BCR851
|
3.6
|
21.2
|
1.0
|
CD2
|
A:HIS93
|
3.9
|
17.2
|
1.0
|
C3D
|
A:CLA808
|
4.3
|
19.6
|
1.0
|
C2B
|
A:CLA808
|
4.3
|
19.6
|
1.0
|
C14
|
A:BCR851
|
4.3
|
21.2
|
1.0
|
C3B
|
A:CLA808
|
4.3
|
19.6
|
1.0
|
C2C
|
A:CLA808
|
4.3
|
19.6
|
1.0
|
C16
|
A:BCR851
|
4.3
|
21.2
|
1.0
|
C2D
|
A:CLA808
|
4.4
|
19.6
|
1.0
|
C3C
|
A:CLA808
|
4.4
|
19.6
|
1.0
|
ND1
|
A:HIS93
|
4.4
|
17.2
|
1.0
|
C3A
|
A:CLA808
|
4.4
|
19.6
|
1.0
|
C2A
|
A:CLA808
|
4.5
|
19.6
|
1.0
|
C17
|
A:BCR851
|
4.6
|
21.2
|
1.0
|
CG
|
A:HIS93
|
4.8
|
17.2
|
1.0
|
CBD
|
A:CLA808
|
4.9
|
19.6
|
1.0
|
|
Magnesium binding site 9 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 9 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:17.7
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
17.7
|
1.0
|
NB
|
A:CLA809
|
2.0
|
17.7
|
1.0
|
ND
|
A:CLA809
|
2.0
|
17.7
|
1.0
|
NA
|
A:CLA809
|
2.1
|
17.7
|
1.0
|
NC
|
A:CLA809
|
2.1
|
17.7
|
1.0
|
OE1
|
A:GLN115
|
2.6
|
18.2
|
1.0
|
C4D
|
A:CLA809
|
2.9
|
17.7
|
1.0
|
C1B
|
A:CLA809
|
3.0
|
17.7
|
1.0
|
C4A
|
A:CLA809
|
3.0
|
17.7
|
1.0
|
C4B
|
A:CLA809
|
3.1
|
17.7
|
1.0
|
C1C
|
A:CLA809
|
3.1
|
17.7
|
1.0
|
C1A
|
A:CLA809
|
3.1
|
17.7
|
1.0
|
C4C
|
A:CLA809
|
3.1
|
17.7
|
1.0
|
C1D
|
A:CLA809
|
3.1
|
17.7
|
1.0
|
CHB
|
A:CLA809
|
3.4
|
17.7
|
1.0
|
CHC
|
A:CLA809
|
3.4
|
17.7
|
1.0
|
CHA
|
A:CLA809
|
3.5
|
17.7
|
1.0
|
CD
|
A:GLN115
|
3.5
|
18.2
|
1.0
|
CHD
|
A:CLA809
|
3.5
|
17.7
|
1.0
|
NE2
|
A:GLN115
|
3.6
|
18.2
|
1.0
|
C6
|
A:CLA829
|
4.2
|
16.2
|
1.0
|
C3D
|
A:CLA809
|
4.3
|
17.7
|
1.0
|
C2B
|
A:CLA809
|
4.3
|
17.7
|
1.0
|
C3B
|
A:CLA809
|
4.3
|
17.7
|
1.0
|
C2C
|
A:CLA809
|
4.3
|
17.7
|
1.0
|
C4
|
A:CLA829
|
4.3
|
16.2
|
1.0
|
C2D
|
A:CLA809
|
4.4
|
17.7
|
1.0
|
C3C
|
A:CLA809
|
4.4
|
17.7
|
1.0
|
C3A
|
A:CLA809
|
4.4
|
17.7
|
1.0
|
C2A
|
A:CLA809
|
4.4
|
17.7
|
1.0
|
CG
|
A:GLN115
|
4.9
|
18.2
|
1.0
|
CBD
|
A:CLA809
|
4.9
|
17.7
|
1.0
|
O1A
|
A:CLA809
|
5.0
|
17.7
|
1.0
|
|
Magnesium binding site 10 out
of 97 in 6tra
Go back to
Magnesium Binding Sites List in 6tra
Magnesium binding site 10 out
of 97 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:19.5
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
19.5
|
1.0
|
NB
|
A:CLA810
|
2.0
|
19.5
|
1.0
|
ND
|
A:CLA810
|
2.0
|
19.5
|
1.0
|
NC
|
A:CLA810
|
2.1
|
19.5
|
1.0
|
NA
|
A:CLA810
|
2.1
|
19.5
|
1.0
|
OE1
|
A:GLN123
|
2.2
|
21.1
|
1.0
|
C4D
|
A:CLA810
|
2.9
|
19.5
|
1.0
|
C1B
|
A:CLA810
|
3.0
|
19.5
|
1.0
|
C4A
|
A:CLA810
|
3.0
|
19.5
|
1.0
|
C4B
|
A:CLA810
|
3.1
|
19.5
|
1.0
|
C1C
|
A:CLA810
|
3.1
|
19.5
|
1.0
|
CD
|
A:GLN123
|
3.1
|
21.1
|
1.0
|
C4C
|
A:CLA810
|
3.1
|
19.5
|
1.0
|
C1D
|
A:CLA810
|
3.1
|
19.5
|
1.0
|
C1A
|
A:CLA810
|
3.2
|
19.5
|
1.0
|
C19
|
A:CLA829
|
3.3
|
16.2
|
1.0
|
CHB
|
A:CLA810
|
3.4
|
19.5
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
19.5
|
1.0
|
CHA
|
A:CLA810
|
3.5
|
19.5
|
1.0
|
CHD
|
A:CLA810
|
3.5
|
19.5
|
1.0
|
NE2
|
A:GLN123
|
3.5
|
21.1
|
1.0
|
C3D
|
A:CLA810
|
4.3
|
19.5
|
1.0
|
C2B
|
A:CLA810
|
4.3
|
19.5
|
1.0
|
C3B
|
A:CLA810
|
4.3
|
19.5
|
1.0
|
CG
|
A:GLN123
|
4.3
|
21.1
|
1.0
|
C18
|
A:CLA829
|
4.3
|
16.2
|
1.0
|
C2C
|
A:CLA810
|
4.3
|
19.5
|
1.0
|
C2D
|
A:CLA810
|
4.3
|
19.5
|
1.0
|
C3C
|
A:CLA810
|
4.4
|
19.5
|
1.0
|
C3A
|
A:CLA810
|
4.4
|
19.5
|
1.0
|
C2A
|
A:CLA810
|
4.5
|
19.5
|
1.0
|
CBD
|
A:CLA810
|
4.9
|
19.5
|
1.0
|
|
Reference:
A.Koelsch,
C.Radon,
M.Golub,
A.Baumert,
J.Burger,
T.Miehlke,
F.Lisdat,
A.Feoktystov,
J.Pieper,
A.Zouni,
P.Wendler.
Current Limits of Structural Biology: the Transient Interaction Between Cytochrome C6 and Photosystem I Curr.Opin.Struct.Biol. V. 2 171 2020.
ISSN: ISSN 0959-440X
DOI: 10.1016/J.CRSTBI.2020.08.003
Page generated: Tue Oct 1 19:07:15 2024
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