Magnesium in PDB 6trd: Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
All present enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6:
1.97.1.12;
Other elements in 6trd:
The structure of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
290;
Page 30, Binding sites: 291 -
291;
Binding sites:
The binding sites of Magnesium atom in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
(pdb code 6trd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 291 binding sites of Magnesium where determined in the
Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6, PDB code: 6trd:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 1 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:1.1
occ:1.00
|
MG
|
A:CL0801
|
0.0
|
1.1
|
1.0
|
NB
|
A:CL0801
|
2.0
|
1.1
|
1.0
|
ND
|
A:CL0801
|
2.0
|
1.1
|
1.0
|
NA
|
A:CL0801
|
2.1
|
1.1
|
1.0
|
NC
|
A:CL0801
|
2.1
|
1.1
|
1.0
|
NE2
|
A:HIS680
|
2.8
|
2.1
|
1.0
|
C4D
|
A:CL0801
|
2.9
|
1.1
|
1.0
|
C1B
|
A:CL0801
|
3.0
|
1.1
|
1.0
|
C4A
|
A:CL0801
|
3.0
|
1.1
|
1.0
|
C4B
|
A:CL0801
|
3.0
|
1.1
|
1.0
|
C1C
|
A:CL0801
|
3.1
|
1.1
|
1.0
|
C4C
|
A:CL0801
|
3.1
|
1.1
|
1.0
|
C1D
|
A:CL0801
|
3.1
|
1.1
|
1.0
|
C1A
|
A:CL0801
|
3.2
|
1.1
|
1.0
|
CHB
|
A:CL0801
|
3.4
|
1.1
|
1.0
|
CHC
|
A:CL0801
|
3.4
|
1.1
|
1.0
|
CHA
|
A:CL0801
|
3.5
|
1.1
|
1.0
|
CHD
|
A:CL0801
|
3.5
|
1.1
|
1.0
|
CE1
|
A:HIS680
|
3.5
|
2.1
|
1.0
|
CAB
|
B:CLA802
|
3.7
|
1.7
|
1.0
|
CD2
|
A:HIS680
|
3.8
|
2.1
|
1.0
|
C3B
|
B:CLA802
|
3.9
|
1.7
|
1.0
|
C4B
|
B:CLA802
|
4.2
|
1.7
|
1.0
|
C3D
|
A:CL0801
|
4.2
|
1.1
|
1.0
|
C2B
|
A:CL0801
|
4.3
|
1.1
|
1.0
|
C3B
|
A:CL0801
|
4.3
|
1.1
|
1.0
|
CHC
|
B:CLA802
|
4.3
|
1.7
|
1.0
|
C2C
|
A:CL0801
|
4.3
|
1.1
|
1.0
|
C2D
|
A:CL0801
|
4.3
|
1.1
|
1.0
|
C3C
|
A:CL0801
|
4.4
|
1.1
|
1.0
|
C3A
|
A:CL0801
|
4.4
|
1.1
|
1.0
|
C2A
|
A:CL0801
|
4.4
|
1.1
|
1.0
|
C2B
|
B:CLA802
|
4.6
|
1.7
|
1.0
|
ND1
|
A:HIS680
|
4.6
|
2.1
|
1.0
|
CBB
|
B:CLA802
|
4.7
|
1.7
|
1.0
|
CG
|
A:HIS680
|
4.8
|
2.1
|
1.0
|
CBD
|
A:CL0801
|
4.9
|
1.1
|
1.0
|
NB
|
B:CLA802
|
5.0
|
1.7
|
1.0
|
|
Magnesium binding site 2 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 2 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:4.0
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
4.0
|
1.0
|
NB
|
A:CLA802
|
2.0
|
4.0
|
1.0
|
ND
|
A:CLA802
|
2.0
|
4.0
|
1.0
|
NA
|
A:CLA802
|
2.1
|
4.0
|
1.0
|
NC
|
A:CLA802
|
2.1
|
4.0
|
1.0
|
SD
|
A:MET688
|
2.6
|
2.6
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
4.0
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
4.0
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
4.0
|
1.0
|
C1C
|
A:CLA802
|
3.1
|
4.0
|
1.0
|
C4B
|
A:CLA802
|
3.1
|
4.0
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
4.0
|
1.0
|
C1A
|
A:CLA802
|
3.1
|
4.0
|
1.0
|
C1D
|
A:CLA802
|
3.1
|
4.0
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
4.0
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
4.0
|
1.0
|
CHA
|
A:CLA802
|
3.5
|
4.0
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
4.0
|
1.0
|
NE1
|
B:TRP588
|
3.6
|
2.2
|
1.0
|
CG
|
A:MET688
|
3.8
|
2.6
|
1.0
|
CE
|
A:MET688
|
3.8
|
2.6
|
1.0
|
CZ2
|
B:TRP588
|
4.0
|
2.2
|
1.0
|
CE2
|
B:TRP588
|
4.1
|
2.2
|
1.0
|
C3D
|
A:CLA802
|
4.2
|
4.0
|
1.0
|
C2B
|
A:CLA802
|
4.3
|
4.0
|
1.0
|
CB
|
A:MET688
|
4.3
|
2.6
|
1.0
|
C3B
|
A:CLA802
|
4.3
|
4.0
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
4.0
|
1.0
|
C2D
|
A:CLA802
|
4.3
|
4.0
|
1.0
|
C3C
|
A:CLA802
|
4.3
|
4.0
|
1.0
|
C3A
|
A:CLA802
|
4.4
|
4.0
|
1.0
|
C2A
|
A:CLA802
|
4.4
|
4.0
|
1.0
|
CD1
|
B:TRP588
|
4.8
|
2.2
|
1.0
|
CBD
|
A:CLA802
|
4.9
|
4.0
|
1.0
|
|
Magnesium binding site 3 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 3 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:1.7
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
1.7
|
1.0
|
NB
|
A:CLA803
|
2.0
|
1.7
|
1.0
|
ND
|
A:CLA803
|
2.0
|
1.7
|
1.0
|
NC
|
A:CLA803
|
2.1
|
1.7
|
1.0
|
NA
|
A:CLA803
|
2.1
|
1.7
|
1.0
|
O
|
A:HOH903
|
2.3
|
1.8
|
1.0
|
C4D
|
A:CLA803
|
2.9
|
1.7
|
1.0
|
C1B
|
A:CLA803
|
3.0
|
1.7
|
1.0
|
C4B
|
A:CLA803
|
3.0
|
1.7
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
1.7
|
1.0
|
C1C
|
A:CLA803
|
3.1
|
1.7
|
1.0
|
C4C
|
A:CLA803
|
3.1
|
1.7
|
1.0
|
C1D
|
A:CLA803
|
3.1
|
1.7
|
1.0
|
C1A
|
A:CLA803
|
3.1
|
1.7
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
1.7
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
1.7
|
1.0
|
CHA
|
A:CLA803
|
3.5
|
1.7
|
1.0
|
CBB
|
B:CLA803
|
3.5
|
4.9
|
1.0
|
CHD
|
A:CLA803
|
3.5
|
1.7
|
1.0
|
CAB
|
B:CLA803
|
4.0
|
4.9
|
1.0
|
C2B
|
A:CLA803
|
4.2
|
1.7
|
1.0
|
C3B
|
A:CLA803
|
4.2
|
1.7
|
1.0
|
C3D
|
A:CLA803
|
4.2
|
1.7
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
1.7
|
1.0
|
C3C
|
A:CLA803
|
4.3
|
1.7
|
1.0
|
C2D
|
A:CLA803
|
4.3
|
1.7
|
1.0
|
C3A
|
A:CLA803
|
4.4
|
1.7
|
1.0
|
CB
|
B:ALA664
|
4.4
|
4.9
|
1.0
|
C2A
|
A:CLA803
|
4.4
|
1.7
|
1.0
|
C3B
|
B:CLA803
|
4.8
|
4.9
|
1.0
|
OD1
|
A:ASN604
|
4.9
|
0.8
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
1.7
|
1.0
|
C20
|
A:CL0801
|
5.0
|
1.1
|
1.0
|
|
Magnesium binding site 4 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 4 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:7.6
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
7.6
|
1.0
|
NB
|
A:CLA804
|
2.0
|
7.6
|
1.0
|
ND
|
A:CLA804
|
2.0
|
7.6
|
1.0
|
NC
|
A:CLA804
|
2.1
|
7.6
|
1.0
|
NA
|
A:CLA804
|
2.1
|
7.6
|
1.0
|
NE2
|
A:HIS52
|
2.9
|
5.6
|
1.0
|
C4D
|
A:CLA804
|
2.9
|
7.6
|
1.0
|
C1B
|
A:CLA804
|
3.0
|
7.6
|
1.0
|
C4A
|
A:CLA804
|
3.0
|
7.6
|
1.0
|
C4B
|
A:CLA804
|
3.1
|
7.6
|
1.0
|
C1C
|
A:CLA804
|
3.1
|
7.6
|
1.0
|
C4C
|
A:CLA804
|
3.1
|
7.6
|
1.0
|
C1A
|
A:CLA804
|
3.1
|
7.6
|
1.0
|
C1D
|
A:CLA804
|
3.1
|
7.6
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
7.6
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
7.6
|
1.0
|
CHA
|
A:CLA804
|
3.5
|
7.6
|
1.0
|
CHD
|
A:CLA804
|
3.5
|
7.6
|
1.0
|
CB
|
J:PRO12
|
3.6
|
9.7
|
1.0
|
CD2
|
A:HIS52
|
3.7
|
5.6
|
1.0
|
CG
|
J:PRO12
|
3.9
|
9.7
|
1.0
|
CE1
|
A:HIS52
|
4.0
|
5.6
|
1.0
|
C3D
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C2B
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C3B
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C2C
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C2D
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C3C
|
A:CLA804
|
4.3
|
7.6
|
1.0
|
C3A
|
A:CLA804
|
4.4
|
7.6
|
1.0
|
C2A
|
A:CLA804
|
4.4
|
7.6
|
1.0
|
C39
|
A:BCR856
|
4.6
|
11.1
|
1.0
|
CD
|
J:PRO12
|
4.8
|
9.7
|
1.0
|
CBD
|
A:CLA804
|
4.9
|
7.6
|
1.0
|
CG
|
A:HIS52
|
4.9
|
5.6
|
1.0
|
CA
|
J:PRO12
|
5.0
|
9.7
|
1.0
|
|
Magnesium binding site 5 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 5 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:7.4
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
7.4
|
1.0
|
NB
|
A:CLA805
|
2.0
|
7.4
|
1.0
|
ND
|
A:CLA805
|
2.0
|
7.4
|
1.0
|
NC
|
A:CLA805
|
2.1
|
7.4
|
1.0
|
NA
|
A:CLA805
|
2.1
|
7.4
|
1.0
|
NE2
|
A:HIS56
|
2.8
|
5.5
|
1.0
|
C4D
|
A:CLA805
|
2.9
|
7.4
|
1.0
|
C1B
|
A:CLA805
|
3.0
|
7.4
|
1.0
|
C4A
|
A:CLA805
|
3.0
|
7.4
|
1.0
|
C4B
|
A:CLA805
|
3.1
|
7.4
|
1.0
|
C1C
|
A:CLA805
|
3.1
|
7.4
|
1.0
|
C4C
|
A:CLA805
|
3.1
|
7.4
|
1.0
|
C1D
|
A:CLA805
|
3.1
|
7.4
|
1.0
|
C1A
|
A:CLA805
|
3.2
|
7.4
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
7.4
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
7.4
|
1.0
|
CHA
|
A:CLA805
|
3.5
|
7.4
|
1.0
|
CHD
|
A:CLA805
|
3.5
|
7.4
|
1.0
|
CE1
|
A:HIS56
|
3.6
|
5.5
|
1.0
|
CD2
|
A:HIS56
|
3.9
|
5.5
|
1.0
|
C7
|
A:CLA812
|
3.9
|
9.0
|
1.0
|
C3D
|
A:CLA805
|
4.3
|
7.4
|
1.0
|
C2B
|
A:CLA805
|
4.3
|
7.4
|
1.0
|
C3B
|
A:CLA805
|
4.3
|
7.4
|
1.0
|
C2C
|
A:CLA805
|
4.3
|
7.4
|
1.0
|
C2D
|
A:CLA805
|
4.3
|
7.4
|
1.0
|
C3C
|
A:CLA805
|
4.4
|
7.4
|
1.0
|
C3A
|
A:CLA805
|
4.4
|
7.4
|
1.0
|
C2A
|
A:CLA805
|
4.5
|
7.4
|
1.0
|
C10
|
A:CLA812
|
4.5
|
9.0
|
1.0
|
C6
|
A:CLA812
|
4.5
|
9.0
|
1.0
|
C9
|
A:CLA812
|
4.5
|
9.0
|
1.0
|
C8
|
A:CLA812
|
4.5
|
9.0
|
1.0
|
ND1
|
A:HIS56
|
4.8
|
5.5
|
1.0
|
CBD
|
A:CLA805
|
4.9
|
7.4
|
1.0
|
CG
|
A:HIS56
|
5.0
|
5.5
|
1.0
|
|
Magnesium binding site 6 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 6 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:6.3
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
6.3
|
1.0
|
NB
|
A:CLA806
|
2.0
|
6.3
|
1.0
|
ND
|
A:CLA806
|
2.0
|
6.3
|
1.0
|
NC
|
A:CLA806
|
2.1
|
6.3
|
1.0
|
NA
|
A:CLA806
|
2.1
|
6.3
|
1.0
|
C4D
|
A:CLA806
|
2.9
|
6.3
|
1.0
|
NE2
|
A:HIS76
|
2.9
|
6.3
|
1.0
|
C1B
|
A:CLA806
|
3.0
|
6.3
|
1.0
|
C4A
|
A:CLA806
|
3.0
|
6.3
|
1.0
|
C4B
|
A:CLA806
|
3.0
|
6.3
|
1.0
|
C1C
|
A:CLA806
|
3.1
|
6.3
|
1.0
|
C4C
|
A:CLA806
|
3.1
|
6.3
|
1.0
|
C1A
|
A:CLA806
|
3.1
|
6.3
|
1.0
|
C1D
|
A:CLA806
|
3.1
|
6.3
|
1.0
|
CMB
|
A:CLA831
|
3.3
|
3.6
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
6.3
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
6.3
|
1.0
|
CHA
|
A:CLA806
|
3.4
|
6.3
|
1.0
|
CHD
|
A:CLA806
|
3.5
|
6.3
|
1.0
|
CD2
|
A:HIS76
|
3.5
|
6.3
|
1.0
|
CE1
|
A:HIS76
|
4.0
|
6.3
|
1.0
|
C3D
|
A:CLA806
|
4.2
|
6.3
|
1.0
|
C2B
|
A:CLA806
|
4.3
|
6.3
|
1.0
|
C3B
|
A:CLA806
|
4.3
|
6.3
|
1.0
|
C2C
|
A:CLA806
|
4.3
|
6.3
|
1.0
|
C2D
|
A:CLA806
|
4.3
|
6.3
|
1.0
|
C3C
|
A:CLA806
|
4.3
|
6.3
|
1.0
|
C3A
|
A:CLA806
|
4.4
|
6.3
|
1.0
|
C2A
|
A:CLA806
|
4.4
|
6.3
|
1.0
|
C2B
|
A:CLA831
|
4.7
|
3.6
|
1.0
|
CG
|
A:HIS76
|
4.7
|
6.3
|
1.0
|
CG2
|
A:ILE72
|
4.7
|
6.2
|
1.0
|
ND1
|
A:HIS76
|
4.9
|
6.3
|
1.0
|
CBD
|
A:CLA806
|
4.9
|
6.3
|
1.0
|
CBB
|
A:CLA831
|
4.9
|
3.6
|
1.0
|
|
Magnesium binding site 7 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 7 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:4.3
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
4.3
|
1.0
|
NB
|
A:CLA807
|
2.0
|
4.3
|
1.0
|
ND
|
A:CLA807
|
2.0
|
4.3
|
1.0
|
NC
|
A:CLA807
|
2.1
|
4.3
|
1.0
|
NA
|
A:CLA807
|
2.1
|
4.3
|
1.0
|
NE2
|
A:HIS79
|
2.9
|
5.9
|
1.0
|
C4D
|
A:CLA807
|
2.9
|
4.3
|
1.0
|
C1B
|
A:CLA807
|
3.0
|
4.3
|
1.0
|
C4A
|
A:CLA807
|
3.0
|
4.3
|
1.0
|
C1C
|
A:CLA807
|
3.1
|
4.3
|
1.0
|
C4B
|
A:CLA807
|
3.1
|
4.3
|
1.0
|
C4C
|
A:CLA807
|
3.1
|
4.3
|
1.0
|
C1D
|
A:CLA807
|
3.1
|
4.3
|
1.0
|
C1A
|
A:CLA807
|
3.2
|
4.3
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
4.3
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
4.3
|
1.0
|
CHA
|
A:CLA807
|
3.5
|
4.3
|
1.0
|
CHD
|
A:CLA807
|
3.5
|
4.3
|
1.0
|
CD2
|
A:HIS79
|
3.6
|
5.9
|
1.0
|
CE1
|
A:HIS79
|
4.0
|
5.9
|
1.0
|
C16
|
A:CLA807
|
4.0
|
4.3
|
1.0
|
C15
|
A:CLA807
|
4.0
|
4.3
|
1.0
|
C3D
|
A:CLA807
|
4.2
|
4.3
|
1.0
|
C2B
|
A:CLA807
|
4.3
|
4.3
|
1.0
|
C3B
|
A:CLA807
|
4.3
|
4.3
|
1.0
|
C2C
|
A:CLA807
|
4.3
|
4.3
|
1.0
|
C2D
|
A:CLA807
|
4.3
|
4.3
|
1.0
|
C3C
|
A:CLA807
|
4.3
|
4.3
|
1.0
|
C3A
|
A:CLA807
|
4.4
|
4.3
|
1.0
|
C2A
|
A:CLA807
|
4.5
|
4.3
|
1.0
|
C18
|
A:CLA807
|
4.5
|
4.3
|
1.0
|
C17
|
A:CLA807
|
4.8
|
4.3
|
1.0
|
CG
|
A:HIS79
|
4.8
|
5.9
|
1.0
|
CBD
|
A:CLA807
|
4.9
|
4.3
|
1.0
|
ND1
|
A:HIS79
|
5.0
|
5.9
|
1.0
|
|
Magnesium binding site 8 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 8 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:12.9
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
12.9
|
1.0
|
NB
|
A:CLA808
|
2.0
|
12.9
|
1.0
|
ND
|
A:CLA808
|
2.0
|
12.9
|
1.0
|
NA
|
A:CLA808
|
2.1
|
12.9
|
1.0
|
NC
|
A:CLA808
|
2.1
|
12.9
|
1.0
|
NE2
|
A:HIS93
|
2.6
|
8.6
|
1.0
|
C4D
|
A:CLA808
|
2.9
|
12.9
|
1.0
|
C1B
|
A:CLA808
|
3.0
|
12.9
|
1.0
|
C4A
|
A:CLA808
|
3.0
|
12.9
|
1.0
|
C4B
|
A:CLA808
|
3.1
|
12.9
|
1.0
|
C1C
|
A:CLA808
|
3.1
|
12.9
|
1.0
|
C4C
|
A:CLA808
|
3.1
|
12.9
|
1.0
|
C1A
|
A:CLA808
|
3.1
|
12.9
|
1.0
|
C1D
|
A:CLA808
|
3.2
|
12.9
|
1.0
|
CHB
|
A:CLA808
|
3.4
|
12.9
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
12.9
|
1.0
|
CHA
|
A:CLA808
|
3.5
|
12.9
|
1.0
|
CE1
|
A:HIS93
|
3.5
|
8.6
|
1.0
|
CHD
|
A:CLA808
|
3.5
|
12.9
|
1.0
|
C16
|
A:BCR852
|
3.7
|
16.6
|
1.0
|
CD2
|
A:HIS93
|
3.7
|
8.6
|
1.0
|
C15
|
A:BCR852
|
4.0
|
16.6
|
1.0
|
C17
|
A:BCR852
|
4.1
|
16.6
|
1.0
|
C3D
|
A:CLA808
|
4.3
|
12.9
|
1.0
|
C2B
|
A:CLA808
|
4.3
|
12.9
|
1.0
|
C3B
|
A:CLA808
|
4.3
|
12.9
|
1.0
|
C2C
|
A:CLA808
|
4.3
|
12.9
|
1.0
|
C2D
|
A:CLA808
|
4.4
|
12.9
|
1.0
|
C3C
|
A:CLA808
|
4.4
|
12.9
|
1.0
|
C3A
|
A:CLA808
|
4.4
|
12.9
|
1.0
|
C14
|
A:BCR852
|
4.4
|
16.6
|
1.0
|
C2A
|
A:CLA808
|
4.4
|
12.9
|
1.0
|
ND1
|
A:HIS93
|
4.7
|
8.6
|
1.0
|
C18
|
A:BCR852
|
4.8
|
16.6
|
1.0
|
CG
|
A:HIS93
|
4.8
|
8.6
|
1.0
|
CBD
|
A:CLA808
|
4.9
|
12.9
|
1.0
|
|
Magnesium binding site 9 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 9 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:6.6
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
6.6
|
1.0
|
NB
|
A:CLA809
|
2.0
|
6.6
|
1.0
|
ND
|
A:CLA809
|
2.0
|
6.6
|
1.0
|
NA
|
A:CLA809
|
2.1
|
6.6
|
1.0
|
NC
|
A:CLA809
|
2.1
|
6.6
|
1.0
|
OE1
|
A:GLN115
|
2.7
|
8.4
|
1.0
|
C4D
|
A:CLA809
|
2.9
|
6.6
|
1.0
|
C1B
|
A:CLA809
|
3.0
|
6.6
|
1.0
|
C4A
|
A:CLA809
|
3.0
|
6.6
|
1.0
|
C1C
|
A:CLA809
|
3.1
|
6.6
|
1.0
|
C4B
|
A:CLA809
|
3.1
|
6.6
|
1.0
|
C4C
|
A:CLA809
|
3.1
|
6.6
|
1.0
|
C1D
|
A:CLA809
|
3.1
|
6.6
|
1.0
|
C1A
|
A:CLA809
|
3.1
|
6.6
|
1.0
|
CHB
|
A:CLA809
|
3.4
|
6.6
|
1.0
|
CHC
|
A:CLA809
|
3.4
|
6.6
|
1.0
|
CHA
|
A:CLA809
|
3.5
|
6.6
|
1.0
|
CHD
|
A:CLA809
|
3.5
|
6.6
|
1.0
|
CD
|
A:GLN115
|
3.7
|
8.4
|
1.0
|
NE2
|
A:GLN115
|
4.0
|
8.4
|
1.0
|
C5
|
A:CLA829
|
4.1
|
4.5
|
1.0
|
C4
|
A:CLA829
|
4.2
|
4.5
|
1.0
|
C3D
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C2B
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C3B
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C2C
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C3C
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C2D
|
A:CLA809
|
4.3
|
6.6
|
1.0
|
C3A
|
A:CLA809
|
4.4
|
6.6
|
1.0
|
C2A
|
A:CLA809
|
4.4
|
6.6
|
1.0
|
C3
|
A:CLA829
|
4.5
|
4.5
|
1.0
|
C6
|
A:CLA829
|
4.5
|
4.5
|
1.0
|
O1A
|
A:CLA829
|
4.9
|
4.5
|
1.0
|
CBD
|
A:CLA809
|
4.9
|
6.6
|
1.0
|
O1A
|
A:CLA809
|
4.9
|
6.6
|
1.0
|
|
Magnesium binding site 10 out
of 291 in 6trd
Go back to
Magnesium Binding Sites List in 6trd
Magnesium binding site 10 out
of 291 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:10.0
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
10.0
|
1.0
|
OE1
|
A:GLN123
|
1.8
|
9.8
|
1.0
|
NB
|
A:CLA810
|
2.0
|
10.0
|
1.0
|
ND
|
A:CLA810
|
2.0
|
10.0
|
1.0
|
NC
|
A:CLA810
|
2.1
|
10.0
|
1.0
|
NA
|
A:CLA810
|
2.1
|
10.0
|
1.0
|
C4D
|
A:CLA810
|
2.9
|
10.0
|
1.0
|
C1B
|
A:CLA810
|
3.0
|
10.0
|
1.0
|
CD
|
A:GLN123
|
3.0
|
9.8
|
1.0
|
C4A
|
A:CLA810
|
3.0
|
10.0
|
1.0
|
C4B
|
A:CLA810
|
3.1
|
10.0
|
1.0
|
C1C
|
A:CLA810
|
3.1
|
10.0
|
1.0
|
C4C
|
A:CLA810
|
3.1
|
10.0
|
1.0
|
C1D
|
A:CLA810
|
3.1
|
10.0
|
1.0
|
C1A
|
A:CLA810
|
3.2
|
10.0
|
1.0
|
CHB
|
A:CLA810
|
3.4
|
10.0
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
10.0
|
1.0
|
CHA
|
A:CLA810
|
3.5
|
10.0
|
1.0
|
CHD
|
A:CLA810
|
3.5
|
10.0
|
1.0
|
C19
|
A:CLA829
|
3.6
|
4.5
|
1.0
|
NE2
|
A:GLN123
|
3.8
|
9.8
|
1.0
|
CG
|
A:GLN123
|
4.1
|
9.8
|
1.0
|
C18
|
A:CLA829
|
4.2
|
4.5
|
1.0
|
C3D
|
A:CLA810
|
4.2
|
10.0
|
1.0
|
C2B
|
A:CLA810
|
4.3
|
10.0
|
1.0
|
C3B
|
A:CLA810
|
4.3
|
10.0
|
1.0
|
C2C
|
A:CLA810
|
4.3
|
10.0
|
1.0
|
C2D
|
A:CLA810
|
4.3
|
10.0
|
1.0
|
C3C
|
A:CLA810
|
4.4
|
10.0
|
1.0
|
C3A
|
A:CLA810
|
4.4
|
10.0
|
1.0
|
C2A
|
A:CLA810
|
4.5
|
10.0
|
1.0
|
CBD
|
A:CLA810
|
4.9
|
10.0
|
1.0
|
|
Reference:
A.Koelsch,
C.Radon,
M.Golub,
A.Baumert,
J.Burger,
T.Miehlke,
F.Lisdat,
A.Feoktystov,
J.Pieper,
A.Zouni,
P.Wendler.
Current Limits of Structural Biology: the Transient Interaction Between Cytochrome C6 and Photosystem I Curr.Opin.Struct.Biol. V. 2 171 2020.
ISSN: ISSN 0959-440X
DOI: 10.1016/J.CRSTBI.2020.08.003
Page generated: Tue Oct 1 19:08:23 2024
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