Magnesium in PDB 6tu4: Structure of Plasmodium ACTIN1 Filament

Other elements in 6tu4:

The structure of Structure of Plasmodium ACTIN1 Filament also contains other interesting chemical elements:

Bromine (Br) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Plasmodium ACTIN1 Filament (pdb code 6tu4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of Plasmodium ACTIN1 Filament, PDB code: 6tu4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6tu4

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Magnesium binding site 1 out of 5 in the Structure of Plasmodium ACTIN1 Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Plasmodium ACTIN1 Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:28.0
occ:1.00
 O A:HOH513 2.0 28.2 1.0
O A:HOH520 2.0 27.0 1.0
O A:HOH514 2.0 27.7 1.0
O A:HOH525 2.1 26.9 1.0
O A:HOH512 2.1 27.5 1.0
O3B A:ADP403 2.2 30.5 1.0
PB A:ADP403 3.4 30.5 1.0
O2B A:ADP403 3.7 30.5 1.0
O2A A:ADP403 3.8 30.5 1.0
OD2 A:ASP155 4.3 28.4 1.0
OE1 A:GLN138 4.3 31.3 1.0
O3A A:ADP403 4.4 30.5 1.0
O1B A:ADP403 4.5 30.5 1.0
O A:HOH510 4.5 26.3 1.0
OD2 A:ASP12 4.6 29.1 1.0
CD A:GLN138 4.6 31.3 1.0
NZ A:LYS19 4.6 29.6 1.0
PA A:ADP403 4.7 30.5 1.0
NE2 A:GLN138 4.7 31.3 1.0
OD1 A:ASP12 4.8 29.1 1.0
CA A:GLY14 4.8 28.8 1.0
CA A:GLY157 4.8 28.1 1.0

Magnesium binding site 2 out of 5 in 6tu4

Go back to Magnesium Binding Sites List in 6tu4
Magnesium binding site 2 out of 5 in the Structure of Plasmodium ACTIN1 Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Plasmodium ACTIN1 Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:27.2
occ:1.00
 O B:HOH514 2.0 28.7 1.0
O B:HOH504 2.0 28.4 1.0
O B:HOH517 2.1 27.4 1.0
O B:HOH512 2.1 29.3 1.0
O B:HOH508 2.1 30.6 1.0
O3B B:ADP403 2.2 26.9 1.0
PB B:ADP403 3.4 26.9 1.0
O2A B:ADP403 3.6 26.9 1.0
O2B B:ADP403 3.7 26.9 1.0
OE1 B:GLN138 4.3 32.6 1.0
OD2 B:ASP155 4.3 30.0 1.0
O3A B:ADP403 4.5 26.9 1.0
OD2 B:ASP12 4.5 31.8 1.0
O1B B:ADP403 4.5 26.9 1.0
NZ B:LYS19 4.6 31.3 1.0
O B:HOH505 4.6 29.1 1.0
PA B:ADP403 4.6 26.9 1.0
CD B:GLN138 4.6 32.6 1.0
OD1 B:ASP12 4.6 31.8 1.0
CA B:GLY14 4.7 30.2 1.0
CA B:GLY157 4.8 28.8 1.0
NE2 B:GLN138 4.8 32.6 1.0
O B:HOH526 5.0 30.7 1.0

Magnesium binding site 3 out of 5 in 6tu4

Go back to Magnesium Binding Sites List in 6tu4
Magnesium binding site 3 out of 5 in the Structure of Plasmodium ACTIN1 Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Plasmodium ACTIN1 Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:26.7
occ:1.00
 O C:HOH515 2.0 27.9 1.0
O C:HOH518 2.0 27.3 1.0
O C:HOH514 2.1 27.9 1.0
O C:HOH510 2.1 28.5 1.0
O C:HOH504 2.1 30.2 1.0
O3B C:ADP403 2.1 27.9 1.0
PB C:ADP403 3.4 27.9 1.0
O2B C:ADP403 3.7 27.9 1.0
O3A C:ADP403 4.1 27.9 1.0
OE1 C:GLN138 4.2 32.7 1.0
O2A C:ADP403 4.2 27.9 1.0
OD2 C:ASP155 4.3 29.7 1.0
OD2 C:ASP12 4.4 32.9 1.0
CD C:GLN138 4.5 32.7 1.0
OD1 C:ASP12 4.5 32.9 1.0
NE2 C:GLN138 4.5 32.7 1.0
NZ C:LYS19 4.6 32.2 1.0
O C:HOH507 4.6 29.4 1.0
O1B C:ADP403 4.6 27.9 1.0
CA C:GLY14 4.7 30.9 1.0
PA C:ADP403 4.7 27.9 1.0
CA C:GLY157 4.9 27.6 1.0
CG C:ASP12 4.9 32.9 1.0

Magnesium binding site 4 out of 5 in 6tu4

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Magnesium binding site 4 out of 5 in the Structure of Plasmodium ACTIN1 Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Plasmodium ACTIN1 Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:24.4
occ:1.00
 O D:HOH515 2.0 24.7 1.0
O D:HOH522 2.0 25.2 1.0
O D:HOH507 2.1 24.2 1.0
O D:HOH521 2.1 26.1 1.0
O D:HOH511 2.1 26.4 1.0
O3B D:ADP403 2.2 25.0 1.0
PB D:ADP403 3.4 25.0 1.0
O2B D:ADP403 3.7 25.0 1.0
O2A D:ADP403 3.8 25.0 1.0
OD2 D:ASP155 4.3 26.4 1.0
OE1 D:GLN138 4.4 30.6 1.0
O3A D:ADP403 4.5 25.0 1.0
O1B D:ADP403 4.5 25.0 1.0
O D:HOH510 4.5 24.8 1.0
NZ D:LYS19 4.5 28.1 1.0
OD2 D:ASP12 4.6 29.6 1.0
PA D:ADP403 4.6 25.0 1.0
CD D:GLN138 4.7 30.6 1.0
OD1 D:ASP12 4.7 29.6 1.0
CA D:GLY14 4.7 26.7 1.0
NE2 D:GLN138 4.8 30.6 1.0
CA D:GLY157 4.8 23.7 1.0
O D:HOH528 5.0 28.4 1.0

Magnesium binding site 5 out of 5 in 6tu4

Go back to Magnesium Binding Sites List in 6tu4
Magnesium binding site 5 out of 5 in the Structure of Plasmodium ACTIN1 Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Plasmodium ACTIN1 Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg401

b:24.6
occ:1.00
 O F:HOH512 2.0 24.1 1.0
O F:HOH510 2.1 24.4 1.0
O F:HOH517 2.1 25.2 1.0
O F:HOH519 2.1 25.5 1.0
O F:HOH511 2.1 25.4 1.0
O3B F:ADP403 2.2 26.6 1.0
PB F:ADP403 3.4 26.6 1.0
O2B F:ADP403 3.7 26.6 1.0
O2A F:ADP403 3.8 26.6 1.0
OE1 F:GLN138 4.4 29.3 1.0
O3A F:ADP403 4.4 26.6 1.0
O F:HOH508 4.5 25.2 1.0
O1B F:ADP403 4.5 26.6 1.0
NZ F:LYS19 4.5 26.7 1.0
OD2 F:ASP12 4.5 27.8 1.0
OD1 F:ASP155 4.6 26.0 1.0
PA F:ADP403 4.7 26.6 1.0
CD F:GLN138 4.7 29.3 1.0
CA F:GLY157 4.7 24.3 1.0
OD1 F:ASP12 4.7 27.8 1.0
CA F:GLY14 4.8 26.6 1.0
NE2 F:GLN138 4.9 29.3 1.0

Reference:

J.Vahokoski, L.J.Calder, A.J.Lopez, J.E.Molloy, P.B.Rosenthal, I.Kursula. Malaria Parasite Actomyosin Rigor-State Structure at Near-Atomic Resolution To Be Published.
Page generated: Mon Jan 25 15:15:56 2021

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