Magnesium in PDB 6tv6: Octameric Mcsb From Bacillus Subtilis.

Enzymatic activity of Octameric Mcsb From Bacillus Subtilis.

All present enzymatic activity of Octameric Mcsb From Bacillus Subtilis.:
2.7.14.1;

Protein crystallography data

The structure of Octameric Mcsb From Bacillus Subtilis., PDB code: 6tv6 was solved by M.J.Suskiewicz, B.Hajdusits, A.Meinhart, T.Clausen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.90 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 137.79, 147.64, 81.47, 90, 90, 90
R / Rfree (%) 19.5 / 23.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Octameric Mcsb From Bacillus Subtilis. (pdb code 6tv6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Octameric Mcsb From Bacillus Subtilis., PDB code: 6tv6:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6tv6

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Magnesium binding site 1 out of 4 in the Octameric Mcsb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Octameric Mcsb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:69.8
occ:1.00
O A:HOH602 2.1 67.3 1.0
O A:HOH612 2.1 65.8 1.0
O A:HOH619 2.1 58.4 1.0
OD2 A:ASP146 2.1 58.4 1.0
O A:HOH601 2.1 61.5 1.0
O A:HOH625 2.4 67.3 1.0
CG A:ASP146 3.1 55.8 1.0
OH A:TYR163 3.6 58.9 1.0
CB A:ASP146 3.7 50.1 1.0
NH2 A:ARG34 3.9 48.2 1.0
OD1 A:ASP146 4.0 58.7 1.0
OD1 A:ASP147 4.1 64.7 1.0
OE1 A:GLU150 4.3 72.0 1.0
OD1 A:ASN143 4.4 59.5 1.0
CZ A:TYR163 4.6 55.2 1.0
C A:ASP146 4.7 60.9 1.0
N A:ASP147 4.8 60.3 1.0
CA A:ASP146 4.8 53.7 1.0
CZ A:ARG34 4.8 53.2 1.0
NE A:ARG34 4.9 51.8 1.0

Magnesium binding site 2 out of 4 in 6tv6

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Magnesium binding site 2 out of 4 in the Octameric Mcsb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Octameric Mcsb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg500

b:55.7
occ:1.00
O B:HOH601 2.1 56.6 1.0
O B:HOH616 2.1 54.6 1.0
O B:HOH623 2.1 48.8 1.0
O B:HOH618 2.1 53.7 1.0
O B:HOH606 2.1 53.8 1.0
OD2 B:ASP146 2.1 52.9 1.0
CG B:ASP146 3.1 45.9 1.0
OD1 B:ASP147 3.6 46.0 1.0
CB B:ASP146 3.6 49.1 1.0
OE1 B:GLU150 3.9 56.2 1.0
OH B:TYR163 3.9 61.2 1.0
OD1 B:ASP146 4.1 43.2 1.0
NH2 B:ARG34 4.4 41.1 1.0
OD1 B:ASN143 4.5 52.4 1.0
C B:ASP146 4.6 51.1 1.0
N B:ASP147 4.6 48.9 1.0
CA B:ASP146 4.8 48.0 1.0
CG B:ASP147 4.8 52.2 1.0
O B:ASN143 4.9 51.8 1.0
O B:ASP146 4.9 45.8 1.0
CD B:GLU150 5.0 60.2 1.0

Magnesium binding site 3 out of 4 in 6tv6

Go back to Magnesium Binding Sites List in 6tv6
Magnesium binding site 3 out of 4 in the Octameric Mcsb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Octameric Mcsb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg500

b:47.0
occ:1.00
O C:HOH630 2.1 34.2 1.0
O C:HOH640 2.1 36.0 1.0
O C:HOH636 2.1 55.3 1.0
O C:HOH617 2.1 44.9 1.0
O C:HOH604 2.1 44.2 1.0
OD2 C:ASP146 2.1 39.7 1.0
CG C:ASP146 3.2 37.3 1.0
OH C:TYR163 3.7 57.0 1.0
NH1 C:ARG34 3.8 45.0 1.0
CB C:ASP146 3.9 38.5 1.0
OE1 C:GLU150 4.1 53.2 1.0
OD1 C:ASP146 4.1 41.3 1.0
OD1 C:ASP147 4.2 45.2 1.0
OD1 C:ASN143 4.4 47.1 1.0
CZ C:TYR163 4.7 50.7 1.0
CZ C:ARG34 4.8 43.5 1.0
NE C:ARG34 4.9 47.3 1.0
C C:ASP146 5.0 43.5 1.0

Magnesium binding site 4 out of 4 in 6tv6

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Magnesium binding site 4 out of 4 in the Octameric Mcsb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Octameric Mcsb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg500

b:58.4
occ:1.00
O D:HOH618 2.1 59.1 1.0
O D:HOH604 2.1 51.8 1.0
O D:HOH612 2.1 50.2 1.0
OD2 D:ASP146 2.1 49.8 1.0
O D:HOH606 2.1 55.8 1.0
O D:HOH627 3.0 64.0 1.0
CG D:ASP146 3.2 49.0 1.0
CB D:ASP146 3.8 44.5 1.0
OD1 D:ASP147 3.9 58.0 1.0
NH2 D:ARG34 3.9 47.3 1.0
OH D:TYR163 4.0 65.2 1.0
OE1 D:GLU150 4.1 57.1 1.0
OD1 D:ASP146 4.1 47.3 1.0
OD1 D:ASN143 4.2 58.5 1.0
C D:ASP146 4.9 47.1 1.0
N D:ASP147 4.9 49.7 1.0
CZ D:ARG34 5.0 48.7 1.0
CA D:ASP146 5.0 44.7 1.0

Reference:

B.Hajdusits, M.J.Suskiewicz, N.Hundt, A.Meinhart, R.Kurzbauer, J.Leodolter, P.Kukura, T.Clausen. To Be Published. To Be Published.
Page generated: Sat Aug 21 14:59:05 2021

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