Magnesium in PDB 6tw1: Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence

Enzymatic activity of Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence

Magnesium Binding Sites:

Magnesium binding site 1 out of 4 in 6tw1

Magnesium Binding Sites List in 6tw1

Magnesium binding site 1 out of 4 in the Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:41.0 occ:1.00 OD1 A:ASP108 2.0 38.9 1.0 O8 A:M4H801 2.1 50.4 1.0 OE1 A:GLU80 2.1 40.1 1.0 O10 A:M4H801 2.1 50.4 1.0 C7 A:M4H801 2.3 50.4 1.0 C1 A:M4H801 2.5 50.4 1.0 C6 A:M4H801 2.5 50.4 1.0 CG A:ASP108 3.0 38.9 1.0 CD A:GLU80 3.2 40.1 1.0 O9 A:M4H801 3.2 50.4 1.0 MG A:MG803 3.4 41.1 1.0 OD2 A:ASP108 3.4 38.9 1.0 CE1 A:HIS41 3.5 49.2 1.0 C5 A:M4H801 3.8 50.4 1.0 C2 A:M4H801 3.8 50.4 1.0 NE2 A:HIS41 3.9 49.2 1.0 OE2 A:GLU80 3.9 40.1 1.0 CG A:GLU80 4.1 40.1 1.0 CB A:ASP108 4.3 38.9 1.0 CB A:GLU80 4.4 40.1 1.0 ND1 A:HIS41 4.5 49.2 1.0 O A:PRO107 4.5 35.8 1.0 O11 A:M4H801 4.6 50.4 1.0 OE1 A:GLU119 4.6 46.6 1.0 O A:LEU106 4.7 36.0 1.0 N4 A:M4H801 4.7 50.4 1.0 CA A:ASP108 4.7 38.9 1.0 C3 A:M4H801 4.7 50.4 1.0 OE2 A:GLU119 4.7 46.6 1.0 C A:PRO107 4.8 35.8 1.0 N A:ASP108 4.9 38.9 1.0

Magnesium binding site 2 out of 4 in 6tw1

Magnesium Binding Sites List in 6tw1

Magnesium binding site 2 out of 4 in the Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:41.1 occ:1.00 O11 A:M4H801 2.0 50.4 1.0 OD2 A:ASP108 2.1 38.9 1.0 O10 A:M4H801 2.1 50.4 1.0 O A:ILE120 2.1 46.1 1.0 OE2 A:GLU119 2.1 46.6 1.0 NE2 A:HIS41 2.3 49.2 1.0 C2 A:M4H801 2.5 50.4 1.0 C1 A:M4H801 2.5 50.4 1.0 CG A:ASP108 3.0 38.9 1.0 CE1 A:HIS41 3.0 49.2 1.0 CD A:GLU119 3.1 46.6 1.0 C A:ILE120 3.2 46.1 1.0 MG A:MG802 3.4 41.0 1.0 OD1 A:ASP108 3.4 38.9 1.0 CD2 A:HIS41 3.4 49.2 1.0 N A:ILE120 3.5 46.1 1.0 OE1 A:GLU119 3.6 46.6 1.0 C3 A:M4H801 3.7 50.4 1.0 C6 A:M4H801 3.8 50.4 1.0 CA A:ILE120 3.9 46.1 1.0 N A:GLY121 4.2 52.2 1.0 ND1 A:HIS41 4.2 49.2 1.0 CB A:ASP108 4.3 38.9 1.0 CG A:GLU119 4.3 46.6 1.0 CB A:ILE120 4.4 46.1 1.0 CG A:HIS41 4.4 49.2 1.0 CA A:GLY121 4.5 52.2 1.0 C A:GLU119 4.6 46.6 1.0 N4 A:M4H801 4.6 50.4 1.0 C5 A:M4H801 4.7 50.4 1.0 C7 A:M4H801 4.8 50.4 1.0 O8 A:M4H801 4.8 50.4 1.0 CA A:GLU119 4.9 46.6 1.0 OE1 A:GLU80 5.0 40.1 1.0

Magnesium binding site 3 out of 4 in 6tw1

Magnesium Binding Sites List in 6tw1

Magnesium binding site 3 out of 4 in the Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:13.7 occ:1.00 OD1 B:ASP305 2.0 13.1 1.0 OD1 B:ASP445 2.1 16.3 1.0 OD1 B:ASP446 2.1 15.9 1.0 O3' M:A36 2.4 23.3 1.0 OP1 M:U37 2.4 23.3 1.0 P M:U37 2.9 23.3 1.0 CG B:ASP445 3.0 16.3 1.0 CG B:ASP305 3.0 13.1 1.0 CG B:ASP446 3.2 15.9 1.0 OD2 B:ASP445 3.2 16.3 1.0 OD2 B:ASP305 3.3 13.1 1.0 C3' M:A36 3.6 23.3 1.0 OD2 B:ASP446 3.8 15.9 1.0 MG B:MG802 3.8 11.7 1.0 C4' M:A36 3.9 23.3 1.0 OP2 M:U37 4.0 23.3 1.0 O5' M:U37 4.0 23.3 1.0 C5' M:U37 4.2 23.3 1.0 C5' M:A36 4.3 23.3 1.0 O2' M:A36 4.3 23.3 1.0 CB B:ASP446 4.3 15.9 1.0 N B:ASP446 4.3 15.9 1.0 CB B:ASP305 4.4 13.1 1.0 CB B:ASP445 4.4 16.3 1.0 CA B:ASP446 4.5 15.9 1.0 C2' M:A36 4.6 23.3 1.0 C B:ASP445 4.6 16.3 1.0 CA B:ASP305 4.9 13.1 1.0 CA B:ASP445 5.0 16.3 1.0

Magnesium binding site 4 out of 4 in 6tw1

Magnesium Binding Sites List in 6tw1

Magnesium binding site 4 out of 4 in the Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bat Influenza A Polymerase Termination Complex with Pyrophosphate Using 44-Mer Vrna Template with Mutated Oligo(U) Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:11.7 occ:1.00 OD2 B:ASP305 2.2 13.1 1.0 O1 B:POP803 2.3 19.3 1.0 O B:ASN306 2.4 12.2 1.0 OP1 M:U37 2.5 23.3 1.0 OD2 B:ASP445 2.7 16.3 1.0 O B:POP803 3.0 19.3 1.0 P1 B:POP803 3.1 19.3 1.0 CG B:ASP305 3.3 13.1 1.0 O3 B:POP803 3.4 19.3 1.0 O4 B:POP803 3.5 19.3 1.0 CG B:ASP445 3.6 16.3 1.0 C B:ASN306 3.6 12.2 1.0 P2 B:POP803 3.6 19.3 1.0 O6 B:POP803 3.7 19.3 1.0 OD1 B:ASP305 3.8 13.1 1.0 MG B:MG801 3.8 13.7 1.0 P M:U37 3.9 23.3 1.0 OD1 B:ASP445 3.9 16.3 1.0 N B:ASN306 3.9 12.2 1.0 NZ B:LYS481 4.1 12.9 1.0 O B:HOH901 4.2 16.0 1.0 C5' M:U37 4.2 23.3 1.0 O5' M:U37 4.3 23.3 1.0 CA B:ASN306 4.3 12.2 1.0 O2 B:POP803 4.5 19.3 1.0 CB B:ASP305 4.5 13.1 1.0 N B:THR307 4.6 13.8 1.0 CB B:ASP445 4.7 16.3 1.0 N B:LYS308 4.7 15.9 1.0 CA B:THR307 4.8 13.8 1.0 CB B:TRP309 4.8 13.7 1.0 O3' M:A36 4.9 23.3 1.0 CB B:ASN306 4.9 12.2 1.0 OP2 M:U37 4.9 23.3 1.0 N B:TRP309 4.9 13.7 1.0 C B:ASP305 5.0 13.1 1.0 CE B:LYS481 5.0 12.9 1.0

Reference: