Magnesium in PDB 6txn: Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
Enzymatic activity of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
All present enzymatic activity of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form:
1.16.3.2;
Protein crystallography data
The structure of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form, PDB code: 6txn
was solved by
P.Wilk,
P.Grudnik,
M.Kumar,
J.Heddle,
S.Chakraborti,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.28 /
2.01
|
|
Space group
|
H 3 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
176.02,
176.02,
356.27,
90,
90,
120
|
|
R / Rfree (%)
|
19.3 /
22.1
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
(pdb code 6txn). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Crystal Structure of Thermotoga Maritima Ferritin in Apo Form, PDB code: 6txn:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 1 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg203
b:57.0
occ:1.00
|
OE1
|
A:GLU52
|
2.0
|
48.0
|
1.0
|
|
OE1
|
A:GLU19
|
2.1
|
41.5
|
1.0
|
|
O
|
A:HOH316
|
2.1
|
30.0
|
1.0
|
|
O
|
A:HOH327
|
2.1
|
51.0
|
1.0
|
|
O
|
A:HOH314
|
2.2
|
56.3
|
1.0
|
|
ND1
|
A:HIS55
|
2.4
|
44.1
|
1.0
|
|
CD
|
A:GLU19
|
3.0
|
40.7
|
1.0
|
|
CD
|
A:GLU52
|
3.1
|
39.8
|
1.0
|
|
OE2
|
A:GLU19
|
3.2
|
51.8
|
1.0
|
|
CE1
|
A:HIS55
|
3.2
|
47.4
|
1.0
|
|
HE1
|
A:HIS55
|
3.3
|
56.9
|
1.0
|
|
OE2
|
A:GLU52
|
3.5
|
46.6
|
1.0
|
|
CG
|
A:HIS55
|
3.5
|
44.0
|
1.0
|
|
HB2
|
A:HIS55
|
3.5
|
47.7
|
1.0
|
|
HG11
|
A:VAL99
|
3.5
|
46.5
|
1.0
|
|
HB3
|
A:HIS55
|
3.8
|
47.7
|
1.0
|
|
CB
|
A:HIS55
|
3.8
|
39.8
|
1.0
|
|
HA
|
A:GLU52
|
3.8
|
41.1
|
1.0
|
|
OE1
|
A:GLN129
|
4.1
|
45.5
|
1.0
|
|
O
|
A:HOH307
|
4.3
|
54.7
|
1.0
|
|
HA
|
A:GLU19
|
4.3
|
43.6
|
1.0
|
|
HB3
|
A:GLU52
|
4.3
|
39.6
|
1.0
|
|
CG
|
A:GLU19
|
4.4
|
40.3
|
1.0
|
|
HB3
|
A:GLU19
|
4.4
|
47.1
|
1.0
|
|
NE2
|
A:HIS55
|
4.4
|
46.1
|
1.0
|
|
CG
|
A:GLU52
|
4.4
|
39.3
|
1.0
|
|
HB2
|
A:SER22
|
4.5
|
43.8
|
1.0
|
|
CG1
|
A:VAL99
|
4.5
|
38.8
|
1.0
|
|
CD2
|
A:HIS55
|
4.5
|
42.1
|
1.0
|
|
HG21
|
A:VAL99
|
4.6
|
49.9
|
1.0
|
|
CA
|
A:GLU52
|
4.7
|
34.2
|
1.0
|
|
CB
|
A:GLU52
|
4.7
|
33.0
|
1.0
|
|
HG3
|
A:GLU19
|
4.7
|
48.4
|
1.0
|
|
HG12
|
A:VAL99
|
4.7
|
46.5
|
1.0
|
|
CB
|
A:GLU19
|
4.8
|
39.2
|
1.0
|
|
HB3
|
A:SER22
|
4.8
|
43.8
|
1.0
|
|
HG13
|
A:VAL99
|
4.8
|
46.5
|
1.0
|
|
HG3
|
A:GLU52
|
4.9
|
47.2
|
1.0
|
|
HD1
|
A:PHE125
|
5.0
|
57.0
|
1.0
|
|
CB
|
A:SER22
|
5.0
|
36.5
|
1.0
|
|
HG2
|
A:GLU19
|
5.0
|
48.4
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 2 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg207
b:47.1
occ:1.00
|
OE1
|
B:GLU52
|
1.9
|
43.6
|
1.0
|
|
O
|
B:HOH327
|
2.1
|
40.9
|
1.0
|
|
O
|
B:HOH308
|
2.1
|
47.3
|
1.0
|
|
O
|
B:HOH326
|
2.2
|
48.1
|
1.0
|
|
OE1
|
B:GLU19
|
2.2
|
42.1
|
1.0
|
|
ND1
|
B:HIS55
|
2.4
|
38.2
|
1.0
|
|
CD
|
B:GLU52
|
3.0
|
38.6
|
1.0
|
|
CE1
|
B:HIS55
|
3.1
|
45.5
|
1.0
|
|
HE1
|
B:HIS55
|
3.1
|
54.6
|
1.0
|
|
CD
|
B:GLU19
|
3.2
|
38.9
|
1.0
|
|
OE2
|
B:GLU52
|
3.4
|
43.8
|
1.0
|
|
OE2
|
B:GLU19
|
3.5
|
47.6
|
1.0
|
|
CG
|
B:HIS55
|
3.5
|
46.3
|
1.0
|
|
HG11
|
B:VAL99
|
3.6
|
53.6
|
1.0
|
|
HB2
|
B:HIS55
|
3.6
|
41.8
|
1.0
|
|
HA
|
B:GLU52
|
3.8
|
50.1
|
1.0
|
|
HB3
|
B:HIS55
|
3.9
|
41.8
|
1.0
|
|
CB
|
B:HIS55
|
3.9
|
34.8
|
1.0
|
|
OE1
|
B:GLN129
|
4.1
|
35.6
|
1.0
|
|
HB3
|
B:GLU52
|
4.3
|
42.5
|
1.0
|
|
CG
|
B:GLU52
|
4.3
|
38.7
|
1.0
|
|
NE2
|
B:HIS55
|
4.3
|
43.7
|
1.0
|
|
HB3
|
B:GLU19
|
4.4
|
42.3
|
1.0
|
|
HA
|
B:GLU19
|
4.4
|
43.2
|
1.0
|
|
CG1
|
B:VAL99
|
4.5
|
44.6
|
1.0
|
|
OE2
|
B:GLU96
|
4.5
|
55.2
|
1.0
|
|
CG
|
B:GLU19
|
4.5
|
40.2
|
1.0
|
|
HB2
|
B:SER22
|
4.5
|
42.4
|
1.0
|
|
CD2
|
B:HIS55
|
4.6
|
37.5
|
1.0
|
|
CB
|
B:GLU52
|
4.6
|
35.4
|
1.0
|
|
CA
|
B:GLU52
|
4.6
|
41.8
|
1.0
|
|
OE1
|
B:GLU96
|
4.6
|
44.7
|
1.0
|
|
HB3
|
B:SER22
|
4.6
|
42.4
|
1.0
|
|
HG12
|
B:VAL99
|
4.7
|
53.6
|
1.0
|
|
HG3
|
B:GLU52
|
4.7
|
46.5
|
1.0
|
|
HG3
|
B:GLU132
|
4.8
|
59.3
|
1.0
|
|
HG21
|
B:VAL99
|
4.9
|
48.5
|
1.0
|
|
OG
|
B:SER22
|
4.9
|
38.9
|
1.0
|
|
CB
|
B:GLU19
|
4.9
|
35.2
|
1.0
|
|
HG3
|
B:GLU19
|
4.9
|
48.2
|
1.0
|
|
CB
|
B:SER22
|
4.9
|
35.3
|
1.0
|
|
HG2
|
B:GLU52
|
4.9
|
46.5
|
1.0
|
|
HG13
|
B:VAL99
|
5.0
|
53.6
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 3 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg205
b:60.1
occ:1.00
|
OE1
|
C:GLU19
|
2.2
|
47.6
|
1.0
|
|
O
|
C:HOH320
|
2.2
|
52.9
|
1.0
|
|
O
|
C:HOH343
|
2.2
|
55.2
|
1.0
|
|
O
|
C:HOH306
|
2.2
|
53.2
|
1.0
|
|
OE1
|
C:GLU52
|
2.3
|
52.8
|
1.0
|
|
ND1
|
C:HIS55
|
2.5
|
50.1
|
1.0
|
|
CD
|
C:GLU19
|
3.0
|
46.5
|
1.0
|
|
OE2
|
C:GLU19
|
3.1
|
45.4
|
1.0
|
|
CE1
|
C:HIS55
|
3.3
|
44.6
|
1.0
|
|
HG11
|
C:VAL99
|
3.3
|
51.3
|
1.0
|
|
HE1
|
C:HIS55
|
3.3
|
53.6
|
1.0
|
|
CD
|
C:GLU52
|
3.5
|
53.0
|
1.0
|
|
CG
|
C:HIS55
|
3.5
|
50.1
|
1.0
|
|
HB3
|
C:HIS55
|
3.7
|
52.1
|
1.0
|
|
HB2
|
C:HIS55
|
3.7
|
52.1
|
1.0
|
|
OE1
|
C:GLN129
|
3.9
|
46.5
|
1.0
|
|
CB
|
C:HIS55
|
3.9
|
43.4
|
1.0
|
|
HG3
|
C:GLU52
|
4.1
|
67.7
|
1.0
|
|
HA
|
C:GLU52
|
4.1
|
51.0
|
1.0
|
|
CG1
|
C:VAL99
|
4.2
|
42.7
|
1.0
|
|
HG
|
C:SER22
|
4.3
|
53.6
|
1.0
|
|
OE2
|
C:GLU52
|
4.3
|
64.8
|
1.0
|
|
OE1
|
C:GLU96
|
4.3
|
52.3
|
1.0
|
|
HB3
|
C:GLU19
|
4.4
|
46.5
|
1.0
|
|
HA
|
C:GLU19
|
4.4
|
51.4
|
1.0
|
|
HG12
|
C:VAL99
|
4.4
|
51.3
|
1.0
|
|
CG
|
C:GLU52
|
4.4
|
56.4
|
1.0
|
|
CG
|
C:GLU19
|
4.4
|
45.5
|
1.0
|
|
OE2
|
C:GLU96
|
4.5
|
51.0
|
1.0
|
|
NE2
|
C:HIS55
|
4.5
|
45.0
|
1.0
|
|
HG21
|
C:VAL99
|
4.5
|
52.0
|
1.0
|
|
CD2
|
C:HIS55
|
4.6
|
44.0
|
1.0
|
|
HB2
|
C:SER22
|
4.7
|
49.9
|
1.0
|
|
HG13
|
C:VAL99
|
4.7
|
51.3
|
1.0
|
|
HG3
|
C:GLU132
|
4.8
|
69.9
|
1.0
|
|
CD
|
C:GLU96
|
4.9
|
58.4
|
1.0
|
|
CB
|
C:GLU19
|
4.9
|
38.7
|
1.0
|
|
HG3
|
C:GLU19
|
4.9
|
54.6
|
1.0
|
|
CD
|
C:GLN129
|
4.9
|
49.4
|
1.0
|
|
HB3
|
C:SER22
|
4.9
|
49.9
|
1.0
|
|
HD1
|
C:PHE125
|
4.9
|
59.4
|
1.0
|
|
OG
|
C:SER22
|
5.0
|
44.6
|
1.0
|
|
HE21
|
C:GLN15
|
5.0
|
61.3
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 4 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg205
b:58.7
occ:1.00
|
O
|
D:HOH326
|
1.9
|
50.2
|
1.0
|
|
O
|
D:HOH311
|
2.0
|
58.4
|
1.0
|
|
OE1
|
D:GLU52
|
2.2
|
49.3
|
1.0
|
|
OE1
|
D:GLU19
|
2.3
|
46.4
|
1.0
|
|
ND1
|
D:HIS55
|
2.3
|
49.8
|
1.0
|
|
O
|
D:HOH335
|
2.4
|
51.3
|
1.0
|
|
HE1
|
D:HIS55
|
3.0
|
62.5
|
1.0
|
|
CE1
|
D:HIS55
|
3.0
|
52.0
|
1.0
|
|
CD
|
D:GLU52
|
3.2
|
48.5
|
1.0
|
|
CD
|
D:GLU19
|
3.2
|
52.3
|
1.0
|
|
OE2
|
D:GLU19
|
3.4
|
57.0
|
1.0
|
|
HG11
|
D:VAL99
|
3.4
|
49.3
|
1.0
|
|
OE2
|
D:GLU52
|
3.4
|
46.6
|
1.0
|
|
CG
|
D:HIS55
|
3.4
|
46.2
|
1.0
|
|
HB3
|
D:HIS55
|
3.8
|
49.0
|
1.0
|
|
HB2
|
D:HIS55
|
3.8
|
49.0
|
1.0
|
|
CB
|
D:HIS55
|
3.9
|
40.8
|
1.0
|
|
HA
|
D:GLU52
|
3.9
|
48.9
|
1.0
|
|
OE1
|
D:GLN129
|
4.0
|
46.4
|
1.0
|
|
NE2
|
D:HIS55
|
4.2
|
47.5
|
1.0
|
|
OE1
|
D:GLU96
|
4.3
|
54.0
|
1.0
|
|
CG1
|
D:VAL99
|
4.3
|
41.1
|
1.0
|
|
OE2
|
D:GLU96
|
4.4
|
56.2
|
1.0
|
|
HB3
|
D:GLU52
|
4.4
|
53.3
|
1.0
|
|
CD2
|
D:HIS55
|
4.4
|
50.8
|
1.0
|
|
HA
|
D:GLU19
|
4.5
|
53.6
|
1.0
|
|
HG21
|
D:VAL99
|
4.5
|
55.2
|
1.0
|
|
CG
|
D:GLU52
|
4.5
|
46.3
|
1.0
|
|
HB3
|
D:GLU19
|
4.5
|
41.4
|
1.0
|
|
HG12
|
D:VAL99
|
4.6
|
49.3
|
1.0
|
|
CG
|
D:GLU19
|
4.6
|
45.2
|
1.0
|
|
HB3
|
D:SER22
|
4.7
|
48.1
|
1.0
|
|
HB2
|
D:SER22
|
4.7
|
48.1
|
1.0
|
|
HG
|
D:SER22
|
4.7
|
50.9
|
1.0
|
|
HG13
|
D:VAL99
|
4.7
|
49.3
|
1.0
|
|
CA
|
D:GLU52
|
4.8
|
40.8
|
1.0
|
|
CB
|
D:GLU52
|
4.8
|
44.4
|
1.0
|
|
CD
|
D:GLU96
|
4.8
|
62.3
|
1.0
|
|
OG
|
D:SER22
|
4.9
|
42.4
|
1.0
|
|
HE2
|
D:HIS55
|
4.9
|
57.0
|
1.0
|
|
HG3
|
D:GLU19
|
4.9
|
54.3
|
1.0
|
|
CB
|
D:GLU19
|
5.0
|
34.4
|
1.0
|
|
HG3
|
D:GLU52
|
5.0
|
55.6
|
1.0
|
|
CB
|
D:SER22
|
5.0
|
40.0
|
1.0
|
|
CD
|
D:GLN129
|
5.0
|
48.1
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 5 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg205
b:63.2
occ:1.00
|
OE1
|
E:GLU52
|
1.8
|
52.3
|
1.0
|
|
O
|
E:HOH308
|
2.0
|
48.4
|
1.0
|
|
O
|
E:HOH319
|
2.0
|
53.9
|
1.0
|
|
OE1
|
E:GLU19
|
2.4
|
60.0
|
1.0
|
|
O
|
E:HOH301
|
2.4
|
52.4
|
1.0
|
|
ND1
|
E:HIS55
|
2.5
|
56.5
|
1.0
|
|
CD
|
E:GLU52
|
2.7
|
49.3
|
1.0
|
|
HE1
|
E:HIS55
|
2.9
|
55.4
|
1.0
|
|
OE2
|
E:GLU19
|
3.0
|
71.6
|
1.0
|
|
OE2
|
E:GLU52
|
3.0
|
50.6
|
1.0
|
|
CD
|
E:GLU19
|
3.0
|
52.8
|
1.0
|
|
CE1
|
E:HIS55
|
3.1
|
46.1
|
1.0
|
|
HG11
|
E:VAL99
|
3.5
|
46.0
|
1.0
|
|
HA
|
E:GLU52
|
3.6
|
60.8
|
1.0
|
|
CG
|
E:HIS55
|
3.7
|
53.1
|
1.0
|
|
OE1
|
E:GLN129
|
3.9
|
45.2
|
1.0
|
|
OE2
|
E:GLU96
|
4.0
|
54.1
|
1.0
|
|
HB2
|
E:HIS55
|
4.1
|
59.4
|
1.0
|
|
OE1
|
E:GLU96
|
4.1
|
54.8
|
1.0
|
|
CG
|
E:GLU52
|
4.1
|
44.4
|
1.0
|
|
HB3
|
E:HIS55
|
4.3
|
59.4
|
1.0
|
|
CB
|
E:HIS55
|
4.3
|
49.5
|
1.0
|
|
NE2
|
E:HIS55
|
4.3
|
57.8
|
1.0
|
|
HB3
|
E:GLU52
|
4.4
|
51.2
|
1.0
|
|
HG
|
E:SER22
|
4.4
|
50.8
|
1.0
|
|
HG21
|
E:VAL99
|
4.4
|
50.0
|
1.0
|
|
HG3
|
E:GLU52
|
4.4
|
53.3
|
1.0
|
|
CG1
|
E:VAL99
|
4.5
|
38.3
|
1.0
|
|
CA
|
E:GLU52
|
4.5
|
50.6
|
1.0
|
|
CD
|
E:GLU96
|
4.5
|
57.0
|
1.0
|
|
CG
|
E:GLU19
|
4.5
|
46.6
|
1.0
|
|
HB2
|
E:SER22
|
4.5
|
42.9
|
1.0
|
|
HB3
|
E:SER22
|
4.5
|
42.9
|
1.0
|
|
CB
|
E:GLU52
|
4.6
|
42.7
|
1.0
|
|
CD2
|
E:HIS55
|
4.7
|
50.8
|
1.0
|
|
HA
|
E:GLU19
|
4.7
|
53.6
|
1.0
|
|
HG2
|
E:GLU52
|
4.7
|
53.3
|
1.0
|
|
HG12
|
E:VAL99
|
4.8
|
46.0
|
1.0
|
|
OE1
|
E:GLU132
|
4.8
|
69.8
|
1.0
|
|
HE2
|
E:TYR26
|
4.8
|
50.8
|
1.0
|
|
HB3
|
E:GLU19
|
4.8
|
53.1
|
1.0
|
|
HE21
|
E:GLN48
|
4.8
|
57.1
|
1.0
|
|
CB
|
E:SER22
|
4.9
|
35.7
|
1.0
|
|
OG
|
E:SER22
|
4.9
|
42.3
|
1.0
|
|
HE22
|
E:GLN129
|
4.9
|
57.8
|
1.0
|
|
CD
|
E:GLN129
|
4.9
|
43.1
|
1.0
|
|
HG2
|
E:GLU19
|
5.0
|
56.0
|
1.0
|
|
HG3
|
E:GLU19
|
5.0
|
56.0
|
1.0
|
|
HG13
|
E:VAL99
|
5.0
|
46.0
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 6 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg203
b:57.8
occ:1.00
|
OE1
|
F:GLU19
|
1.8
|
51.0
|
1.0
|
|
O
|
F:HOH322
|
1.9
|
30.0
|
1.0
|
|
OE1
|
F:GLU52
|
1.9
|
53.7
|
1.0
|
|
O
|
F:HOH323
|
2.0
|
59.5
|
1.0
|
|
O
|
F:HOH311
|
2.2
|
52.2
|
1.0
|
|
ND1
|
F:HIS55
|
2.3
|
52.6
|
1.0
|
|
CD
|
F:GLU19
|
2.8
|
39.9
|
1.0
|
|
CD
|
F:GLU52
|
3.0
|
53.2
|
1.0
|
|
CE1
|
F:HIS55
|
3.1
|
65.8
|
1.0
|
|
OE2
|
F:GLU19
|
3.1
|
49.3
|
1.0
|
|
HE1
|
F:HIS55
|
3.2
|
78.9
|
1.0
|
|
CG
|
F:HIS55
|
3.3
|
50.8
|
1.0
|
|
HB2
|
F:HIS55
|
3.5
|
59.4
|
1.0
|
|
HG11
|
F:VAL99
|
3.5
|
62.0
|
1.0
|
|
HB3
|
F:HIS55
|
3.5
|
59.4
|
1.0
|
|
OE2
|
F:GLU52
|
3.5
|
54.0
|
1.0
|
|
CB
|
F:HIS55
|
3.7
|
49.5
|
1.0
|
|
HA
|
F:GLU52
|
3.8
|
44.4
|
1.0
|
|
CG
|
F:GLU19
|
4.2
|
46.6
|
1.0
|
|
OE1
|
F:GLN129
|
4.2
|
50.9
|
1.0
|
|
HB3
|
F:GLU19
|
4.2
|
41.4
|
1.0
|
|
HA
|
F:GLU19
|
4.3
|
51.3
|
1.0
|
|
NE2
|
F:HIS55
|
4.3
|
56.8
|
1.0
|
|
HB3
|
F:GLU52
|
4.3
|
53.0
|
1.0
|
|
CG
|
F:GLU52
|
4.4
|
48.3
|
1.0
|
|
HG
|
F:SER22
|
4.4
|
53.6
|
1.0
|
|
CD2
|
F:HIS55
|
4.4
|
42.1
|
1.0
|
|
CG1
|
F:VAL99
|
4.4
|
51.6
|
1.0
|
|
HB2
|
F:SER22
|
4.5
|
47.6
|
1.0
|
|
HG3
|
F:GLU19
|
4.5
|
55.9
|
1.0
|
|
OE1
|
F:GLU96
|
4.5
|
64.7
|
1.0
|
|
OE2
|
F:GLU96
|
4.5
|
57.7
|
1.0
|
|
CA
|
F:GLU52
|
4.6
|
36.9
|
1.0
|
|
CB
|
F:GLU19
|
4.6
|
34.5
|
1.0
|
|
CB
|
F:GLU52
|
4.6
|
44.2
|
1.0
|
|
HG12
|
F:VAL99
|
4.7
|
62.0
|
1.0
|
|
HB3
|
F:SER22
|
4.7
|
47.6
|
1.0
|
|
HG13
|
F:VAL99
|
4.7
|
62.0
|
1.0
|
|
HG3
|
F:GLU52
|
4.7
|
58.0
|
1.0
|
|
HG2
|
F:GLU19
|
4.8
|
55.9
|
1.0
|
|
HG21
|
F:VAL99
|
4.9
|
66.2
|
1.0
|
|
HG3
|
F:GLU132
|
4.9
|
77.5
|
1.0
|
|
CB
|
F:SER22
|
4.9
|
39.6
|
1.0
|
|
CD
|
F:GLU96
|
4.9
|
63.2
|
1.0
|
|
CA
|
F:GLU19
|
5.0
|
42.8
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 7 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg203
b:58.8
occ:1.00
|
O
|
G:HOH304
|
2.0
|
64.2
|
1.0
|
|
OE1
|
G:GLU19
|
2.0
|
67.7
|
1.0
|
|
OE1
|
G:GLU52
|
2.1
|
65.3
|
1.0
|
|
O
|
G:HOH332
|
2.2
|
30.0
|
1.0
|
|
O
|
G:HOH302
|
2.2
|
60.9
|
1.0
|
|
ND1
|
G:HIS55
|
2.5
|
62.6
|
1.0
|
|
CD
|
G:GLU52
|
2.8
|
60.8
|
1.0
|
|
CD
|
G:GLU19
|
2.9
|
55.0
|
1.0
|
|
OE2
|
G:GLU52
|
2.9
|
62.0
|
1.0
|
|
OE2
|
G:GLU19
|
3.0
|
60.4
|
1.0
|
|
HE1
|
G:HIS55
|
3.3
|
75.4
|
1.0
|
|
CE1
|
G:HIS55
|
3.3
|
62.8
|
1.0
|
|
CG
|
G:HIS55
|
3.6
|
59.9
|
1.0
|
|
HG11
|
G:VAL99
|
3.7
|
63.7
|
1.0
|
|
HA
|
G:GLU52
|
3.7
|
89.3
|
1.0
|
|
HB2
|
G:HIS55
|
3.7
|
67.6
|
1.0
|
|
HB3
|
G:HIS55
|
3.9
|
67.6
|
1.0
|
|
CB
|
G:HIS55
|
4.0
|
56.3
|
1.0
|
|
OE1
|
G:GLN129
|
4.2
|
46.7
|
1.0
|
|
CG
|
G:GLU52
|
4.2
|
57.7
|
1.0
|
|
CG
|
G:GLU19
|
4.3
|
50.7
|
1.0
|
|
OE1
|
G:GLU96
|
4.4
|
63.2
|
1.0
|
|
HA
|
G:GLU19
|
4.4
|
55.6
|
1.0
|
|
HB2
|
G:SER22
|
4.4
|
56.7
|
1.0
|
|
NE2
|
G:HIS55
|
4.4
|
57.0
|
1.0
|
|
HB3
|
G:GLU19
|
4.5
|
53.2
|
1.0
|
|
HG3
|
G:GLU52
|
4.5
|
69.3
|
1.0
|
|
CG1
|
G:VAL99
|
4.6
|
53.1
|
1.0
|
|
CA
|
G:GLU52
|
4.6
|
74.4
|
1.0
|
|
CD2
|
G:HIS55
|
4.6
|
60.5
|
1.0
|
|
OE2
|
G:GLU96
|
4.6
|
53.0
|
1.0
|
|
HB3
|
G:GLU52
|
4.6
|
70.7
|
1.0
|
|
HG12
|
G:VAL99
|
4.7
|
63.7
|
1.0
|
|
HG3
|
G:GLU19
|
4.7
|
60.9
|
1.0
|
|
CB
|
G:GLU52
|
4.7
|
58.9
|
1.0
|
|
HB3
|
G:SER22
|
4.8
|
56.7
|
1.0
|
|
HG21
|
G:VAL99
|
4.8
|
54.7
|
1.0
|
|
OG
|
G:SER22
|
4.8
|
47.6
|
1.0
|
|
CB
|
G:GLU19
|
4.8
|
44.4
|
1.0
|
|
HG
|
G:SER22
|
4.8
|
57.2
|
1.0
|
|
HG2
|
G:GLU52
|
4.8
|
69.3
|
1.0
|
|
CB
|
G:SER22
|
4.9
|
47.2
|
1.0
|
|
HG2
|
G:GLU19
|
4.9
|
60.9
|
1.0
|
|
CD
|
G:GLU96
|
5.0
|
55.7
|
1.0
|
|
OE2
|
G:GLU132
|
5.0
|
71.8
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 6txn
Go back to
Magnesium Binding Sites List in 6txn
Magnesium binding site 8 out
of 8 in the Crystal Structure of Thermotoga Maritima Ferritin in Apo Form
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Thermotoga Maritima Ferritin in Apo Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg203
b:30.0
occ:1.00
|
OE1
|
H:GLU52
|
1.6
|
54.4
|
1.0
|
|
O
|
H:HOH306
|
1.7
|
57.0
|
1.0
|
|
O
|
H:HOH307
|
1.8
|
57.2
|
1.0
|
|
OE1
|
H:GLU19
|
2.2
|
58.0
|
1.0
|
|
ND1
|
H:HIS55
|
2.6
|
51.0
|
1.0
|
|
CD
|
H:GLU52
|
2.6
|
48.9
|
1.0
|
|
OE2
|
H:GLU52
|
3.0
|
54.3
|
1.0
|
|
HE1
|
H:HIS55
|
3.2
|
62.0
|
1.0
|
|
CD
|
H:GLU19
|
3.3
|
49.8
|
1.0
|
|
CE1
|
H:HIS55
|
3.3
|
51.6
|
1.0
|
|
HG11
|
H:VAL99
|
3.4
|
61.1
|
1.0
|
|
OE2
|
H:GLU19
|
3.6
|
52.5
|
1.0
|
|
CG
|
H:HIS55
|
3.7
|
49.9
|
1.0
|
|
HG
|
H:SER22
|
3.9
|
63.2
|
1.0
|
|
HA
|
H:GLU52
|
3.9
|
57.0
|
1.0
|
|
HB2
|
H:HIS55
|
3.9
|
56.1
|
1.0
|
|
CG
|
H:GLU52
|
4.0
|
49.9
|
1.0
|
|
OE1
|
H:GLN129
|
4.1
|
51.0
|
1.0
|
|
HB3
|
H:HIS55
|
4.1
|
56.1
|
1.0
|
|
HB3
|
H:GLU52
|
4.1
|
65.9
|
1.0
|
|
OE1
|
H:GLU96
|
4.2
|
67.2
|
1.0
|
|
CB
|
H:HIS55
|
4.2
|
46.7
|
1.0
|
|
OE2
|
H:GLU96
|
4.3
|
61.8
|
1.0
|
|
CG1
|
H:VAL99
|
4.3
|
50.9
|
1.0
|
|
HB2
|
H:SER22
|
4.3
|
54.2
|
1.0
|
|
HG3
|
H:GLU52
|
4.4
|
59.9
|
1.0
|
|
HB3
|
H:SER22
|
4.4
|
54.2
|
1.0
|
|
HA
|
H:GLU19
|
4.4
|
52.8
|
1.0
|
|
CB
|
H:GLU52
|
4.5
|
54.9
|
1.0
|
|
HG21
|
H:VAL99
|
4.5
|
59.2
|
1.0
|
|
NE2
|
H:HIS55
|
4.5
|
60.4
|
1.0
|
|
HG12
|
H:VAL99
|
4.5
|
61.1
|
1.0
|
|
HB3
|
H:GLU19
|
4.5
|
55.3
|
1.0
|
|
HG2
|
H:GLU52
|
4.6
|
59.9
|
1.0
|
|
OG
|
H:SER22
|
4.6
|
52.6
|
1.0
|
|
CG
|
H:GLU19
|
4.6
|
54.6
|
1.0
|
|
CA
|
H:GLU52
|
4.7
|
47.5
|
1.0
|
|
CB
|
H:SER22
|
4.7
|
45.1
|
1.0
|
|
CD
|
H:GLU96
|
4.7
|
65.5
|
1.0
|
|
CD2
|
H:HIS55
|
4.7
|
49.1
|
1.0
|
|
HG13
|
H:VAL99
|
4.8
|
61.1
|
1.0
|
|
HG22
|
H:VAL99
|
4.9
|
59.2
|
1.0
|
|
HE22
|
H:GLN129
|
4.9
|
65.3
|
1.0
|
|
HE2
|
H:TYR26
|
5.0
|
61.9
|
1.0
|
|
OE1
|
H:GLU132
|
5.0
|
69.0
|
1.0
|
|
CB
|
H:GLU19
|
5.0
|
46.0
|
1.0
|
|
CD
|
H:GLN129
|
5.0
|
58.1
|
1.0
|
|
Reference:
P.Grudnik,
P.Wilk,
M.Kumar,
J.Heddle,
S.Chakraborti.
Crystal Structure of Thermotoga Maritima Ferritin in Apo Form with Magnesium Bound To Be Published.
Page generated: Tue Oct 1 20:34:43 2024
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