Magnesium in PDB 6tzz: Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium

The structure of Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium, PDB code: 6tzz was solved by V.I.Khayyo, M.V.Airola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.49 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	165.410, 57.644, 84.191, 90.00, 114.90, 90.00
R / Rfree (%)	24.2 / 28.8

The binding sites of Magnesium atom in the Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium (pdb code 6tzz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium, PDB code: 6tzz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:57.8 occ:1.00 OD2 A:ASP146 1.9 59.0 1.0 OD1 A:ASN268 2.0 51.7 1.0 O A:ASP148 2.1 60.8 1.0 O A:HOH515 2.6 27.3 1.0 CG A:ASP146 2.9 51.6 1.0 CG A:ASN268 3.2 45.9 1.0 OD1 A:ASP146 3.2 69.3 1.0 C A:ASP148 3.3 60.5 1.0 ND2 A:ASN268 3.9 39.8 1.0 CA A:ASP148 4.1 66.0 1.0 NZ A:LYS244 4.2 86.9 1.0 CB A:ASP148 4.2 79.9 1.0 CB A:ASP146 4.2 28.7 1.0 N A:ASP148 4.3 64.8 1.0 N A:GLY149 4.3 64.4 1.0 CB A:ASN268 4.4 44.2 1.0 OD2 A:ASP272 4.5 81.6 1.0 CA A:GLY149 4.5 57.6 1.0 OD1 A:ASP272 4.6 84.5 1.0 OG1 A:THR150 4.6 34.8 1.0 N A:ASN268 4.8 27.1 1.0 CG A:ASP272 4.9 80.9 1.0 N A:THR150 5.0 60.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:57.5 occ:1.00 O B:ASP148 2.1 76.3 1.0 OD2 B:ASP146 2.2 39.2 1.0 O B:HOH509 2.4 64.4 1.0 OD1 B:ASN268 2.9 71.2 1.0 ND2 B:ASN268 3.1 62.1 1.0 CG B:ASP146 3.3 40.9 1.0 C B:ASP148 3.3 80.8 1.0 CG B:ASN268 3.4 65.1 1.0 OD1 B:ASP146 3.7 51.5 1.0 CB B:ASP148 4.1 93.8 1.0 CA B:ASP148 4.1 79.7 1.0 OD2 B:ASP272 4.2 67.8 1.0 NZ B:LYS244 4.2 0.5 1.0 N B:GLY149 4.3 70.0 1.0 N B:ASP148 4.4 71.5 1.0 CA B:GLY149 4.5 51.3 1.0 CB B:ASP146 4.6 30.8 1.0 CB B:ASN268 4.9 60.9 1.0 OD1 B:ASP272 4.9 72.6 1.0 OG1 B:THR150 4.9 56.6 1.0 CG B:ASP272 5.0 70.5 1.0

V.I.Khayyo, R.M.Hoffmann, H.Wang, J.A.Bell, J.E.Burke, K.Reue, M.V.Airola. Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase Nat Commun V. 11 1309 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-15124-Z