Magnesium in PDB 6u0t: Protofilament Ribbon Flagellar Proteins RIB43A-S

The binding sites of Magnesium atom in the Protofilament Ribbon Flagellar Proteins RIB43A-S (pdb code 6u0t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Protofilament Ribbon Flagellar Proteins RIB43A-S, PDB code: 6u0t:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:56.2 occ:1.00 O3G C:GTP501 2.0 60.7 1.0 O1A C:GTP501 2.0 60.7 1.0 O1B C:GTP501 2.0 60.7 1.0 O3A C:GTP501 2.1 60.7 1.0 PB C:GTP501 2.3 60.7 1.0 PA C:GTP501 2.4 60.7 1.0 PG C:GTP501 2.7 60.7 1.0 O3B C:GTP501 2.7 60.7 1.0 O2G C:GTP501 3.1 60.7 1.0 O2A C:GTP501 3.2 60.7 1.0 OE2 C:GLU71 3.2 67.8 1.0 CB C:GLN11 3.5 55.1 1.0 O2B C:GTP501 3.7 60.7 1.0 O5' C:GTP501 3.9 60.7 1.0 NZ B:LYS252 4.0 62.2 1.0 CD C:GLU71 4.1 67.8 1.0 O1G C:GTP501 4.1 60.7 1.0 CG C:GLN11 4.2 55.1 1.0 OE1 C:GLU71 4.4 67.8 1.0 CA C:GLN11 4.7 55.1 1.0 C5' C:GTP501 4.7 60.7 1.0 N C:GLN11 4.8 55.1 1.0 CE B:LYS252 4.9 62.2 1.0 OE1 C:GLN11 4.9 55.1 1.0 CG2 C:THR145 4.9 57.1 1.0 O B:ASN247 4.9 64.4 1.0

Magnesium binding site 2 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:67.9 occ:1.00 O3B D:GTP501 1.9 64.1 1.0 O2G D:GTP501 2.0 64.1 1.0 CG2 D:THR145 2.3 64.8 1.0 PG D:GTP501 2.4 64.1 1.0 PB D:GTP501 2.7 64.1 1.0 O1B D:GTP501 2.7 64.1 1.0 CB D:ALA99 2.8 60.4 1.0 CB D:THR145 3.2 64.8 1.0 O2B D:GTP501 3.3 64.1 1.0 O3G D:GTP501 3.3 64.1 1.0 N D:THR145 3.5 64.8 1.0 O1G D:GTP501 3.6 64.1 1.0 CA D:THR145 4.0 64.8 1.0 CA D:ALA99 4.1 60.4 1.0 N D:ALA99 4.1 60.4 1.0 O3A D:GTP501 4.1 64.1 1.0 OE2 D:GLU71 4.3 65.7 1.0 OG1 D:THR145 4.4 64.8 1.0 C D:GLY144 4.6 65.3 1.0 CD D:GLU71 4.6 65.7 1.0 N D:GLY144 4.7 65.3 1.0 CA D:GLY144 4.8 65.3 1.0 N D:GLY146 4.8 62.5 1.0 C D:THR145 4.9 64.8 1.0 CG D:GLU71 5.0 65.7 1.0

Magnesium binding site 3 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:56.0 occ:1.00 O3G E:GTP501 2.0 56.3 1.0 O1B E:GTP501 2.0 56.3 1.0 OE2 E:GLU71 2.0 62.3 1.0 O3B E:GTP501 2.1 56.3 1.0 PG E:GTP501 2.2 56.3 1.0 PB E:GTP501 2.3 56.3 1.0 CD E:GLU71 2.6 62.3 1.0 O2G E:GTP501 2.7 56.3 1.0 O3A E:GTP501 2.9 56.3 1.0 O1A E:GTP501 3.3 56.3 1.0 OE1 E:GLU71 3.3 62.3 1.0 CG E:GLU71 3.5 62.3 1.0 PA E:GTP501 3.6 56.3 1.0 O1G E:GTP501 3.7 56.3 1.0 O2B E:GTP501 3.7 56.3 1.0 CB E:GLN11 3.8 54.8 1.0 CG2 E:THR145 3.9 57.4 1.0 O2A E:GTP501 4.0 56.3 1.0 N E:GLN11 4.3 54.8 1.0 OD1 E:ASP69 4.6 60.2 1.0 CA E:GLN11 4.6 54.8 1.0 OD2 E:ASP69 4.7 60.2 1.0 CB E:GLU71 4.7 62.3 1.0 OD1 J:ASN247 4.7 60.5 1.0 C E:GLY10 4.9 54.1 1.0 CG E:GLN11 4.9 54.8 1.0

Magnesium binding site 4 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:60.8 occ:1.00 O1B F:GTP501 2.0 58.8 1.0 OE2 F:GLU71 2.0 63.7 1.0 O2G F:GTP501 2.0 58.8 1.0 PG F:GTP501 2.3 58.8 1.0 O3G F:GTP501 2.3 58.8 1.0 CD F:GLU71 2.4 63.7 1.0 O3B F:GTP501 2.4 58.8 1.0 PB F:GTP501 2.6 58.8 1.0 OE1 F:GLU71 2.9 63.7 1.0 CG F:GLU71 3.4 63.7 1.0 OD1 F:ASP69 3.5 59.7 1.0 O3A F:GTP501 3.5 58.8 1.0 CG2 F:THR145 3.7 56.8 1.0 O1G F:GTP501 3.8 58.8 1.0 O1A F:GTP501 3.8 58.8 1.0 O2B F:GTP501 3.9 58.8 1.0 CB F:GLN11 4.1 53.6 1.0 PA F:GTP501 4.2 58.8 1.0 OD2 F:ASP69 4.3 59.7 1.0 CB F:GLU71 4.3 63.7 1.0 CG F:ASP69 4.3 59.7 1.0 O2A F:GTP501 4.6 58.8 1.0 N F:GLN11 4.8 53.6 1.0 CB F:THR145 5.0 56.8 1.0

Magnesium binding site 5 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:72.7 occ:1.00 O3G G:GTP501 2.0 64.3 1.0 O2B G:GTP501 2.1 64.3 1.0 O1B G:GTP501 2.1 64.3 1.0 OE2 G:GLU71 2.1 68.8 1.0 CD G:GLU71 2.3 68.8 1.0 PB G:GTP501 2.3 64.3 1.0 OE1 G:GLU71 2.6 68.8 1.0 PG G:GTP501 2.7 64.3 1.0 O3B G:GTP501 2.8 64.3 1.0 CG G:GLU71 3.2 68.8 1.0 O2G G:GTP501 3.3 64.3 1.0 O3A G:GTP501 3.9 64.3 1.0 CB G:GLU71 4.1 68.8 1.0 CG2 G:THR145 4.1 65.7 1.0 O1G G:GTP501 4.1 64.3 1.0 OD2 G:ASP69 4.2 68.1 1.0 CB G:GLN11 4.4 56.0 1.0 OD1 L:ASN247 4.6 61.9 1.0 OD1 G:ASP69 4.7 68.1 1.0 CB G:ASP98 4.8 68.5 1.0 CG G:ASP98 4.8 68.5 1.0 CG G:GLN11 4.9 56.0 1.0 CG G:ASP69 4.9 68.1 1.0 PA G:GTP501 5.0 64.3 1.0

Magnesium binding site 6 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Protofilament Ribbon Flagellar Proteins RIB43A-S within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:68.0 occ:1.00 O1B H:GTP501 2.0 65.8 1.0 O2G H:GTP501 2.1 65.8 1.0 OE2 H:GLU71 2.1 66.4 1.0 CD H:GLU71 2.3 66.4 1.0 PG H:GTP501 2.5 65.8 1.0 O3G H:GTP501 2.5 65.8 1.0 OE1 H:GLU71 2.6 66.4 1.0 O3B H:GTP501 2.8 65.8 1.0 PB H:GTP501 2.8 65.8 1.0 CG2 H:THR145 3.0 65.2 1.0 CG H:GLU71 3.3 66.4 1.0 O2B H:GTP501 3.5 65.8 1.0 O1G H:GTP501 3.9 65.8 1.0 OD1 H:ASP69 4.1 64.6 1.0 OD2 H:ASP69 4.1 64.6 1.0 CB H:GLN11 4.1 58.3 1.0 O3A H:GTP501 4.2 65.8 1.0 CB H:THR145 4.2 65.2 1.0 CB H:GLU71 4.3 66.4 1.0 NZ M:LYS252 4.5 62.8 1.0 CG H:ASP69 4.5 64.6 1.0 OE1 H:GLN11 4.8 58.3 1.0 CE M:LYS252 4.9 62.8 1.0 N H:GLN11 4.9 58.3 1.0 N H:THR145 5.0 65.2 1.0

M.Ichikawa, A.A.Z.Khalifa, S.Kubo, D.Dai, K.Basu, M.A.F.Maghrebi, J.Vargas, K.H.Bui. Tubulin Lattice in Cilia Is in A Stressed Form Regulated By Microtubule Inner Proteins. Proc.Natl.Acad.Sci.Usa V. 116 19930 2019.
ISSN: ESSN 1091-6490
PubMed: 31527277
DOI: 10.1073/PNAS.1911119116