Magnesium in PDB 6u0u: Protofilament Ribbon Flagellar Proteins RIB43A-L

The binding sites of Magnesium atom in the Protofilament Ribbon Flagellar Proteins RIB43A-L (pdb code 6u0u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Protofilament Ribbon Flagellar Proteins RIB43A-L, PDB code: 6u0u:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:70.2 occ:1.00 O3G C:GTP501 2.0 71.4 1.0 O1A C:GTP501 2.0 71.4 1.0 O1B C:GTP501 2.0 71.4 1.0 O3A C:GTP501 2.1 71.4 1.0 PB C:GTP501 2.3 71.4 1.0 PA C:GTP501 2.4 71.4 1.0 PG C:GTP501 2.7 71.4 1.0 O3B C:GTP501 2.7 71.4 1.0 OE2 C:GLU71 3.2 74.1 1.0 O2A C:GTP501 3.2 71.4 1.0 O2G C:GTP501 3.2 71.4 1.0 CB C:GLN11 3.5 66.6 1.0 O2B C:GTP501 3.7 71.4 1.0 O5' C:GTP501 3.9 71.4 1.0 CD C:GLU71 4.0 74.1 1.0 O1G C:GTP501 4.1 71.4 1.0 CG C:GLN11 4.2 66.6 1.0 NZ B:LYS252 4.4 70.7 1.0 OE1 C:GLU71 4.4 74.1 1.0 CA C:GLN11 4.7 66.6 1.0 N C:GLN11 4.7 66.6 1.0 C5' C:GTP501 4.7 71.4 1.0

Magnesium binding site 2 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:76.5 occ:1.00 O3B D:GTP501 1.9 72.2 1.0 PG D:GTP501 2.3 72.2 1.0 O1G D:GTP501 2.3 72.2 1.0 CB D:ALA99 2.3 72.2 1.0 CG2 D:THR145 2.4 73.2 1.0 O2G D:GTP501 2.6 72.2 1.0 CB D:THR145 2.9 73.2 1.0 PB D:GTP501 3.3 72.2 1.0 N D:THR145 3.5 73.2 1.0 CA D:ALA99 3.6 72.2 1.0 O2B D:GTP501 3.7 72.2 1.0 O1B D:GTP501 3.7 72.2 1.0 O3G D:GTP501 3.8 72.2 1.0 CA D:THR145 3.8 73.2 1.0 N D:ALA99 3.8 72.2 1.0 OG1 D:THR145 4.1 73.2 1.0 C D:GLY144 4.5 75.8 1.0 O3A D:GTP501 4.6 72.2 1.0 C D:ALA99 4.7 72.2 1.0 C D:THR145 4.8 73.2 1.0 C D:ASP98 4.8 77.8 1.0 CA D:GLY144 4.9 75.8 1.0 N D:GLY144 4.9 75.8 1.0 OE2 D:GLU71 5.0 77.6 1.0

Magnesium binding site 3 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:70.1 occ:1.00 O3G E:GTP501 1.9 68.1 1.0 OE2 E:GLU71 2.0 75.7 1.0 O1B E:GTP501 2.1 68.1 1.0 PB E:GTP501 2.2 68.1 1.0 O3B E:GTP501 2.3 68.1 1.0 O3A E:GTP501 2.4 68.1 1.0 O1A E:GTP501 2.5 68.1 1.0 PG E:GTP501 2.5 68.1 1.0 PA E:GTP501 2.8 68.1 1.0 CD E:GLU71 3.0 75.7 1.0 CB E:GLN11 3.3 67.6 1.0 O2G E:GTP501 3.4 68.1 1.0 O2A E:GTP501 3.4 68.1 1.0 OE1 E:GLU71 3.6 75.7 1.0 O2B E:GTP501 3.7 68.1 1.0 O1G E:GTP501 3.8 68.1 1.0 N E:GLN11 4.2 67.6 1.0 CG E:GLU71 4.2 75.7 1.0 CG E:GLN11 4.3 67.6 1.0 CA E:GLN11 4.3 67.6 1.0 O5' E:GTP501 4.4 68.1 1.0 OD1 J:ASN247 4.5 71.5 1.0 CG2 E:THR145 4.6 72.7 1.0 NE2 E:GLN11 4.7 67.6 1.0

Magnesium binding site 4 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:65.7 occ:1.00 O3G F:GTP501 2.0 67.1 1.0 O1B F:GTP501 2.0 67.1 1.0 O3B F:GTP501 2.0 67.1 1.0 OE2 F:GLU71 2.1 67.8 1.0 PG F:GTP501 2.3 67.1 1.0 PB F:GTP501 2.3 67.1 1.0 O2G F:GTP501 3.0 67.1 1.0 CD F:GLU71 3.0 67.8 1.0 O3A F:GTP501 3.1 67.1 1.0 CB F:GLN11 3.2 64.4 1.0 O1A F:GTP501 3.6 67.1 1.0 O1G F:GTP501 3.7 67.1 1.0 O2B F:GTP501 3.7 67.1 1.0 OE1 F:GLU71 3.7 67.8 1.0 PA F:GTP501 3.8 67.1 1.0 N F:GLN11 3.8 64.4 1.0 OD2 F:ASP69 4.0 63.7 1.0 CA F:GLN11 4.0 64.4 1.0 OD1 F:ASP69 4.0 63.7 1.0 CG F:GLU71 4.0 67.8 1.0 O2A F:GTP501 4.0 67.1 1.0 CG2 F:THR145 4.1 68.0 1.0 CG F:GLN11 4.4 64.4 1.0 CG F:ASP69 4.4 63.7 1.0 C F:GLY10 4.4 62.4 1.0 OE1 F:GLN11 4.4 64.4 1.0 CD F:GLN11 4.9 64.4 1.0 CA F:GLY10 4.9 62.4 1.0

Magnesium binding site 5 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:80.7 occ:1.00 O1B G:GTP501 2.0 71.2 1.0 PB G:GTP501 2.3 71.2 1.0 O2B G:GTP501 2.3 71.2 1.0 O2G G:GTP501 2.3 71.2 1.0 OE2 G:GLU71 2.3 75.7 1.0 CD G:GLU71 2.4 75.7 1.0 O3B G:GTP501 2.6 71.2 1.0 OE1 G:GLU71 2.7 75.7 1.0 CG2 G:THR145 2.7 71.7 1.0 PG G:GTP501 2.9 71.2 1.0 CG G:GLU71 3.3 75.7 1.0 O3G G:GTP501 3.7 71.2 1.0 CB G:THR145 3.9 71.7 1.0 O3A G:GTP501 3.9 71.2 1.0 OD1 G:ASP69 4.0 68.9 1.0 CB G:GLU71 4.2 75.7 1.0 O1G G:GTP501 4.2 71.2 1.0 CB G:ASP98 4.6 75.1 1.0 OG1 G:THR145 4.7 71.7 1.0 N G:ALA99 4.7 70.9 1.0 ND2 L:ASN247 4.8 73.7 1.0 NZ L:LYS252 4.8 67.7 1.0 CB G:GLN11 4.8 66.9 1.0 N G:THR145 4.8 71.7 1.0 O2A G:GTP501 4.9 71.2 1.0 CA G:THR145 5.0 71.7 1.0 CA G:ASP98 5.0 75.1 1.0 CG G:ASP69 5.0 68.9 1.0

Magnesium binding site 6 out of 6 in the Protofilament Ribbon Flagellar Proteins RIB43A-L


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Protofilament Ribbon Flagellar Proteins RIB43A-L within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:66.9 occ:1.00 O2G H:GTP501 2.0 65.3 1.0 O2B H:GTP501 2.0 65.3 1.0 OE2 H:GLU71 2.1 68.0 1.0 O3B H:GTP501 2.1 65.3 1.0 PG H:GTP501 2.3 65.3 1.0 PB H:GTP501 2.3 65.3 1.0 CG2 H:THR145 2.5 63.6 1.0 O3G H:GTP501 2.7 65.3 1.0 O1B H:GTP501 2.8 65.3 1.0 CD H:GLU71 3.0 68.0 1.0 CB H:THR145 3.6 63.6 1.0 OE1 H:GLU71 3.7 68.0 1.0 O1G H:GTP501 3.7 65.3 1.0 CG H:GLU71 3.9 68.0 1.0 O3A H:GTP501 3.9 65.3 1.0 OD2 H:ASP69 4.1 63.5 1.0 N H:THR145 4.2 63.6 1.0 CA H:THR145 4.5 63.6 1.0 O2A H:GTP501 4.5 65.3 1.0 OG1 H:THR145 4.6 63.6 1.0 NZ M:LYS252 4.7 62.8 1.0 CB H:GLN11 4.7 61.1 1.0 N H:GLN11 4.7 61.1 1.0 OD1 H:ASP69 4.8 63.5 1.0 PA H:GTP501 4.9 65.3 1.0 CG H:ASP69 4.9 63.5 1.0

M.Ichikawa, A.A.Z.Khalifa, S.Kubo, D.Dai, K.Basu, M.A.F.Maghrebi, J.Vargas, K.H.Bui. Tubulin Lattice in Cilia Is in A Stressed Form Regulated By Microtubule Inner Proteins. Proc.Natl.Acad.Sci.Usa V. 116 19930 2019.
ISSN: ESSN 1091-6490
PubMed: 31527277
DOI: 10.1073/PNAS.1911119116