Magnesium in PDB 6u43: Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form)

Protein crystallography data

The structure of Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form), PDB code: 6u43 was solved by M.K.Fenwick, S.E.Ealick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.26 / 1.40
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 57.195, 62.524, 63.396, 64.21, 69.68, 80.51
R / Rfree (%) 16.5 / 19.2

Other elements in 6u43:

The structure of Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form) (pdb code 6u43). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form), PDB code: 6u43:

Magnesium binding site 1 out of 1 in 6u43

Go back to Magnesium Binding Sites List in 6u43
Magnesium binding site 1 out of 1 in the Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Methanoperedens Nitroreducens Elongation Factor 2 H595N Bound to Gmppcp and Magnesium (Triclinic Crystal Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:20.3
occ:1.00
O2G A:GCP801 2.0 22.9 1.0
OG1 A:THR35 2.1 21.8 1.0
O A:HOH1135 2.1 23.8 1.0
O A:HOH1016 2.1 23.1 1.0
O1B A:GCP801 2.1 20.9 1.0
OG1 A:THR71 2.1 20.8 1.0
CB A:THR71 3.1 20.9 1.0
CB A:THR35 3.1 22.1 1.0
PB A:GCP801 3.2 22.3 1.0
PG A:GCP801 3.3 22.5 1.0
C3B A:GCP801 3.4 21.8 1.0
N A:THR35 3.8 20.6 1.0
CG2 A:THR71 4.1 20.5 1.0
CA A:THR35 4.1 21.1 1.0
N A:THR71 4.1 24.8 1.0
O1G A:GCP801 4.1 22.3 1.0
CA A:THR71 4.1 22.5 1.0
OD2 A:ASP94 4.1 22.8 1.0
CG2 A:THR35 4.2 23.3 1.0
O2A A:GCP801 4.2 24.0 1.0
OD1 A:ASP60 4.2 29.8 1.0
O2B A:GCP801 4.3 23.0 1.0
OD1 A:ASP94 4.3 21.7 1.0
OD2 A:ASP60 4.4 33.3 1.0
CE A:LYS34 4.4 19.6 1.0
O3A A:GCP801 4.4 22.2 1.0
O3G A:GCP801 4.5 23.4 1.0
CB A:LYS34 4.5 20.1 1.0
O A:THR95 4.5 20.5 1.0
CG A:ASP94 4.7 21.9 1.0
CG A:ASP60 4.7 32.6 1.0
PA A:GCP801 4.7 23.7 1.0
C A:LYS34 4.8 20.7 1.0

Reference:

M.K.Fenwick, S.E.Ealick. Structural Basis of Elongation Factor 2 Switching Curr Res Struct Biol V. 2 25 2020.
ISSN: ESSN 2665-928X
DOI: 10.1016/J.CRSTBI.2020.02.001
Page generated: Tue Dec 15 00:59:18 2020

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