Magnesium in PDB 6u7b: Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex

Protein crystallography data

The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b was solved by Q.Ye, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 103.84 / 2.09
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.286, 142.897, 151.157, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 23.3

Other elements in 6u7b:

The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex (pdb code 6u7b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6u7b

Go back to Magnesium Binding Sites List in 6u7b
Magnesium binding site 1 out of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:75.8
occ:1.00
O A:HOH503 2.1 47.9 1.0
OD1 A:ASP72 2.3 63.5 1.0
OD1 A:ASP74 2.5 60.1 1.0
CG A:ASP72 3.1 66.7 1.0
OD2 A:ASP72 3.1 66.6 1.0
CG A:ASP74 3.3 57.7 1.0
OD2 A:ASP74 3.4 57.9 1.0
OD2 A:ASP130 3.9 67.9 1.0
HB3 A:ASP130 4.2 77.2 1.0
HB2 A:ASP130 4.3 77.2 1.0
OD1 A:ASN71 4.5 81.6 1.0
CB A:ASP72 4.5 72.6 1.0
CB A:ASP130 4.6 64.3 1.0
O A:ASP72 4.6 82.1 1.0
CG A:ASP130 4.7 66.5 1.0
CB A:ASP74 4.7 55.2 1.0
HD12 A:LEU70 4.8 74.8 1.0
HD11 A:LEU70 4.8 74.8 1.0
HB2 A:ASP72 4.8 87.1 1.0
H A:ASP72 4.9 0.3 1.0
HA A:ASP74 4.9 67.2 1.0
C A:ASP72 4.9 80.6 1.0

Magnesium binding site 2 out of 2 in 6u7b

Go back to Magnesium Binding Sites List in 6u7b
Magnesium binding site 2 out of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:60.0
occ:1.00
O C:HOH518 1.9 34.5 1.0
O C:HOH506 1.9 39.3 1.0
O C:HOH540 2.1 38.2 1.0
O C:HOH600 2.1 42.2 1.0
OD1 C:ASP74 2.1 57.7 1.0
OD1 C:ASP72 2.2 46.9 1.0
CG C:ASP74 3.0 58.9 1.0
CG C:ASP72 3.2 46.4 1.0
OD2 C:ASP74 3.2 62.7 1.0
OD2 C:ASP72 3.5 47.9 1.0
HB3 C:ASP130 3.9 51.5 1.0
O C:ASP72 4.1 42.0 1.0
OD2 C:ASP130 4.2 49.1 1.0
OD1 C:ASN71 4.4 60.6 1.0
CB C:ASP74 4.4 50.0 1.0
HB2 C:ASP130 4.5 51.5 1.0
H C:ASP72 4.5 57.0 1.0
C C:ASP72 4.5 45.0 1.0
HA C:ASP74 4.5 48.7 1.0
CB C:ASP130 4.5 42.9 1.0
CB C:ASP72 4.5 47.3 1.0
N C:ASP74 4.7 36.9 1.0
H C:ASP74 4.7 44.3 1.0
CA C:ASP74 4.8 40.6 1.0
CG C:ASP130 4.8 47.8 1.0
HB2 C:ASP74 4.8 60.0 1.0
HD11 C:LEU70 4.9 41.4 1.0
HB2 C:ASP72 4.9 56.8 1.0
CA C:ASP72 4.9 46.4 1.0
N C:ASP72 4.9 47.5 1.0
O C:HOH538 5.0 47.8 1.0
HB3 C:ASP74 5.0 60.0 1.0

Reference:

Q.Ye, R.K.Lau, I.T.Mathews, E.A.Birkholz, J.D.Watrous, C.S.Azimi, J.Pogliano, M.Jain, K.D.Corbett. Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.
Page generated: Tue Dec 15 00:59:33 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy