Magnesium in PDB 6u8v: Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna

All present enzymatic activity of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna:
2.1.1.37;

The structure of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8v was solved by L.Gao, Z.M.Zhang, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.55 / 3.00
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	193.761, 193.761, 49.757, 90.00, 90.00, 120.00
R / Rfree (%)	21.8 / 24.9

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna (pdb code 6u8v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8v:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:65.7 occ:1.00 CE A:MET742 2.9 92.5 1.0 O A:ASN717 3.1 70.2 1.0 O A:GLY737 3.5 79.1 1.0 SG A:CYS716 3.5 0.6 1.0 C A:ASN717 4.3 69.3 1.0 N A:GLY737 4.3 66.9 1.0 C A:GLY737 4.5 69.4 1.0 O A:PHE735 4.5 66.2 1.0 OD1 A:ASN743 4.6 94.2 1.0 SD A:MET742 4.6 71.2 1.0 N A:VAL719 4.7 57.4 1.0 CG1 A:VAL719 4.7 56.5 1.0 CA A:PRO718 4.9 62.1 1.0 C A:PRO718 4.9 60.1 1.0 N A:ASN717 5.0 64.1 1.0 CA A:GLY737 5.0 72.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:70.9 occ:1.00 CE D:MET742 3.0 91.8 1.0 O D:ASN717 3.1 69.0 1.0 SG D:CYS716 3.6 0.1 1.0 O D:GLY737 3.6 84.3 1.0 CG2 D:VAL719 3.8 75.3 1.0 OD1 D:ASN743 4.2 89.9 1.0 C D:ASN717 4.3 68.3 1.0 N D:GLY737 4.6 73.9 1.0 C D:GLY737 4.6 69.0 1.0 O D:PHE735 4.6 67.4 1.0 N D:VAL719 4.7 58.1 1.0 SD D:MET742 4.8 65.6 1.0 C D:PRO718 4.9 59.0 1.0 CB D:VAL719 4.9 58.5 1.0 CA D:PRO718 4.9 58.5 1.0

L.Gao, L.Gao, Z.M.Zhang, J.Song. N/A N/A.