Magnesium in PDB 6u8w: Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna

All present enzymatic activity of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna:
2.1.1.37;

The structure of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8w was solved by L.Gao, Z.M.Zhang, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.38 / 2.95
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	193.506, 193.506, 49.869, 90.00, 90.00, 120.00
R / Rfree (%)	21.6 / 23.6

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna (pdb code 6u8w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:81.2 occ:1.00 CE A:MET742 2.6 99.2 1.0 O A:ASN717 3.4 72.1 1.0 O A:GLY737 3.5 92.5 1.0 SG A:CYS716 3.8 93.2 1.0 OD1 A:ASN743 4.2 0.9 1.0 SD A:MET742 4.3 85.5 1.0 N A:GLY737 4.4 73.0 1.0 C A:GLY737 4.5 80.0 1.0 C A:ASN717 4.6 74.5 1.0 O A:PHE735 4.6 67.6 1.0 CB A:MET742 4.8 73.7 1.0 CG1 A:VAL719 4.8 71.7 1.0 N A:VAL719 4.8 61.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:75.6 occ:1.00 CE D:MET742 2.7 96.4 1.0 O D:ASN717 3.3 74.2 1.0 O D:GLY737 3.5 90.3 1.0 SG D:CYS716 3.6 99.4 1.0 CG2 D:VAL719 3.8 87.5 1.0 OD1 D:ASN743 4.4 98.2 1.0 SD D:MET742 4.4 76.7 1.0 N D:GLY737 4.5 68.3 1.0 C D:ASN717 4.5 76.7 1.0 C D:GLY737 4.5 74.4 1.0 O D:PHE735 4.6 67.6 1.0 N D:VAL719 4.8 67.4 1.0 CB D:VAL719 4.8 68.3 1.0

L.Gao, L.Gao, Z.M.Zhang, J.Song. N/A N/A.