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Magnesium in PDB 6u8w: Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna

Enzymatic activity of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna

All present enzymatic activity of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna:
2.1.1.37;

Protein crystallography data

The structure of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8w was solved by L.Gao, Z.M.Zhang, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.38 / 2.95
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 193.506, 193.506, 49.869, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 23.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna (pdb code 6u8w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u8w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6u8w

Go back to Magnesium Binding Sites List in 6u8w
Magnesium binding site 1 out of 2 in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:81.2
occ:1.00
CE A:MET742 2.6 99.2 1.0
O A:ASN717 3.4 72.1 1.0
O A:GLY737 3.5 92.5 1.0
SG A:CYS716 3.8 93.2 1.0
OD1 A:ASN743 4.2 0.9 1.0
SD A:MET742 4.3 85.5 1.0
N A:GLY737 4.4 73.0 1.0
C A:GLY737 4.5 80.0 1.0
C A:ASN717 4.6 74.5 1.0
O A:PHE735 4.6 67.6 1.0
CB A:MET742 4.8 73.7 1.0
CG1 A:VAL719 4.8 71.7 1.0
N A:VAL719 4.8 61.1 1.0

Magnesium binding site 2 out of 2 in 6u8w

Go back to Magnesium Binding Sites List in 6u8w
Magnesium binding site 2 out of 2 in the Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B(K777A)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:75.6
occ:1.00
CE D:MET742 2.7 96.4 1.0
O D:ASN717 3.3 74.2 1.0
O D:GLY737 3.5 90.3 1.0
SG D:CYS716 3.6 99.4 1.0
CG2 D:VAL719 3.8 87.5 1.0
OD1 D:ASN743 4.4 98.2 1.0
SD D:MET742 4.4 76.7 1.0
N D:GLY737 4.5 68.3 1.0
C D:ASN717 4.5 76.7 1.0
C D:GLY737 4.5 74.4 1.0
O D:PHE735 4.6 67.6 1.0
N D:VAL719 4.8 67.4 1.0
CB D:VAL719 4.8 68.3 1.0

Reference:

L.Gao, L.Gao, Z.M.Zhang, J.Song. N/A N/A.
Page generated: Tue Oct 1 20:51:51 2024

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