Magnesium in PDB 6u8x: Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna

All present enzymatic activity of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna:
2.1.1.37;

The structure of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna, PDB code: 6u8x was solved by L.Gao, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.88 / 2.95
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	193.845, 193.845, 49.884, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 25.2

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna (pdb code 6u8x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna, PDB code: 6u8x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:70.0 occ:1.00 O A:HOH1002 2.4 68.8 1.0 CE A:MET742 2.8 75.7 1.0 O A:ASN717 3.7 70.7 1.0 O A:GLY737 3.7 81.4 1.0 OD1 A:ASN743 3.9 94.6 1.0 SD A:MET742 4.6 72.4 1.0 CG1 A:VAL719 4.6 66.4 1.0 CB A:MET742 4.7 66.9 1.0 C A:GLY737 4.7 71.8 1.0 CG A:ASN743 4.8 0.5 1.0 C A:ASN717 5.0 70.8 1.0 N A:GLY737 5.0 67.8 1.0 O A:PHE735 5.0 63.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpapg Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg901 b:74.7 occ:1.00 O D:HOH1002 2.4 64.5 1.0 CE D:MET742 2.8 80.2 1.0 OD1 D:ASN743 3.7 84.9 1.0 O D:ASN717 3.8 69.2 1.0 O D:GLY737 3.9 81.4 1.0 SG D:CYS716 4.1 0.2 1.0 SD D:MET742 4.5 77.5 1.0 CG D:ASN743 4.6 95.8 1.0 CB D:MET742 4.6 73.9 1.0 ND2 D:ASN743 4.7 0.6 1.0 CG1 D:VAL719 4.7 70.1 1.0 C D:GLY737 4.9 73.8 1.0 CB D:VAL719 5.0 64.7 1.0

L.Gao, L.Gao, J.Song. N/A N/A.