Magnesium in PDB 6u91: Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna

All present enzymatic activity of Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna:
2.1.1.37;

The structure of Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u91 was solved by L.Gao, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.59 / 3.00
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	190.344, 190.344, 49.644, 90.00, 90.00, 120.00
R / Rfree (%)	21.5 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna (pdb code 6u91). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna, PDB code: 6u91:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:37.9 occ:1.00 NZ D:LYS617 2.8 49.9 1.0 OE2 A:GLU761 3.4 61.0 1.0 OE1 A:GLU761 3.5 59.2 1.0 CD A:GLU761 3.7 64.7 1.0 CE D:LYS617 3.9 38.7 1.0 NE2 A:HIS814 4.1 43.8 1.0 CE1 A:HIS814 4.1 46.2 1.0 O A:HOH1003 4.2 36.6 1.0 CD D:LYS617 4.4 47.9 1.0 CG1 D:VAL616 4.4 41.5 1.0 CG1 A:VAL813 4.8 39.4 1.0 CG A:GLU761 5.0 51.0 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:35.6 occ:1.00 NZ A:LYS617 2.8 56.3 1.0 OE2 D:GLU761 3.4 58.8 1.0 OE1 D:GLU761 3.5 45.5 1.0 CD D:GLU761 3.7 52.1 1.0 NE2 D:HIS814 4.0 43.1 1.0 CE1 D:HIS814 4.0 47.6 1.0 NH1 D:ARG807 4.0 51.5 1.0 CE A:LYS617 4.2 38.2 1.0 CG1 A:VAL616 4.5 44.8 1.0 O D:HOH1004 4.5 37.2 1.0 CG1 D:VAL813 4.6 33.6 1.0 CD A:LYS617 4.6 50.7 1.0 CG2 D:THR803 5.0 54.8 1.0 CG D:GLU761 5.0 41.8 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of DNMT3B(Q772R)-DNMT3L in Complex with Cpgpt Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg901 b:59.3 occ:1.00 O D:ASN743 3.7 75.2 1.0 O D:ARG744 4.1 67.2 1.0 O D:MET720 4.2 52.4 1.0 CG1 D:VAL719 4.3 52.9 1.0 C D:ASN743 4.3 75.3 1.0 CA D:ASN743 4.6 71.4 1.0 O D:MET742 4.7 77.8 1.0 C D:ARG744 4.8 67.0 1.0

L.Gao, L.Gao, J.Song. N/A N/A.