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Magnesium in PDB 6u9h: Arabidopsis Thaliana Acetohydroxyacid Synthase Complex

Enzymatic activity of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex

All present enzymatic activity of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex:
2.2.1.6;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex (pdb code 6u9h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex, PDB code: 6u9h:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 6u9h

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Magnesium binding site 1 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:89.3
occ:1.00
 OD1 A:ASP538 2.0 0.9 1.0
O2A A:TPP703 2.1 0.7 1.0
N A:ASP538 2.1 0.9 1.0
O3A A:TPP703 2.2 0.7 1.0
O1B A:TPP703 2.3 0.7 1.0
PB A:TPP703 2.3 0.7 1.0
CA A:GLY537 2.5 98.5 1.0
PA A:TPP703 2.5 0.7 1.0
O2B A:TPP703 2.5 0.7 1.0
C A:GLY537 2.6 98.5 1.0
CG A:ASP538 3.2 0.9 1.0
CA A:ASP538 3.3 0.9 1.0
N A:GLY539 3.6 93.5 1.0
O7 A:TPP703 3.6 0.7 1.0
O1A A:TPP703 3.7 0.7 1.0
CB A:ASP538 3.7 0.9 1.0
O A:GLY537 3.7 98.5 1.0
N A:GLY537 3.8 98.5 1.0
O3B A:TPP703 3.8 0.7 1.0
C A:ASP538 4.0 0.9 1.0
O A:LEU563 4.2 0.7 1.0
OD1 A:ASN565 4.2 0.1 1.0
OD2 A:ASP538 4.2 0.9 1.0
ND1 A:HIS488 4.3 0.1 1.0
O A:HIS567 4.3 0.1 1.0
C7 A:TPP703 4.6 0.7 1.0
CG A:HIS488 4.8 0.1 1.0
CA A:GLY539 4.8 93.5 1.0
N A:SER540 4.8 92.6 1.0
C A:ASP536 4.9 0.6 1.0
CB A:HIS488 4.9 0.1 1.0
CE1 A:HIS488 4.9 0.1 1.0
C A:LEU563 4.9 0.7 1.0

Magnesium binding site 2 out of 8 in 6u9h

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Magnesium binding site 2 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:0.1
occ:1.00
 O1A B:TPP703 2.1 0.6 1.0
O3A B:TPP703 2.1 0.6 1.0
O1B B:TPP703 2.1 0.6 1.0
PB B:TPP703 2.4 0.6 1.0
CB B:ASP538 2.5 0.5 1.0
PA B:TPP703 2.6 0.6 1.0
O B:HIS567 2.7 0.2 1.0
O3B B:TPP703 2.9 0.6 1.0
N B:ASP538 3.2 0.5 1.0
OD1 B:ASN565 3.3 0.3 1.0
CA B:ASP538 3.4 0.5 1.0
CA B:LEU568 3.4 0.4 1.0
N B:GLY569 3.4 0.9 1.0
CG B:ASP538 3.5 0.5 1.0
OD2 B:ASP538 3.5 0.5 1.0
O7 B:TPP703 3.6 0.6 1.0
C B:HIS567 3.6 0.2 1.0
N B:GLY539 3.8 96.4 1.0
O2A B:TPP703 3.8 0.6 1.0
O2B B:TPP703 3.9 0.6 1.0
N B:LEU568 3.9 0.4 1.0
C B:LEU568 3.9 0.4 1.0
C B:ASP538 4.1 0.5 1.0
C7 B:TPP703 4.2 0.6 1.0
C B:GLY537 4.4 99.8 1.0
CG B:ASN565 4.4 0.3 1.0
CB B:LEU568 4.4 0.4 1.0
CA B:GLY569 4.6 0.9 1.0
OD1 B:ASP538 4.6 0.5 1.0
CG B:LEU568 4.7 0.4 1.0
ND2 B:ASN565 4.7 0.3 1.0
CA B:GLY537 4.8 99.8 1.0
N B:HIS567 4.8 0.2 1.0
CA B:HIS567 4.8 0.2 1.0
OE1 B:GLN487 4.9 0.1 1.0
O B:LEU563 5.0 0.7 1.0

Magnesium binding site 3 out of 8 in 6u9h

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Magnesium binding site 3 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg701

b:85.4
occ:1.00
 OD1 H:ASP538 2.1 0.1 1.0
O2A H:TPP703 2.1 0.9 1.0
N H:ASP538 2.1 0.1 1.0
O3A H:TPP703 2.1 0.9 1.0
PB H:TPP703 2.4 0.9 1.0
O2B H:TPP703 2.4 0.9 1.0
PA H:TPP703 2.5 0.9 1.0
O1B H:TPP703 2.5 0.9 1.0
CA H:GLY537 2.6 97.8 1.0
C H:GLY537 2.6 97.8 1.0
CG H:ASP538 3.1 0.1 1.0
CA H:ASP538 3.3 0.1 1.0
O7 H:TPP703 3.5 0.9 1.0
N H:GLY539 3.5 92.8 1.0
CB H:ASP538 3.7 0.1 1.0
O H:GLY537 3.8 97.8 1.0
O1A H:TPP703 3.8 0.9 1.0
O3B H:TPP703 3.9 0.9 1.0
C H:ASP538 3.9 0.1 1.0
N H:GLY537 3.9 97.8 1.0
OD2 H:ASP538 4.1 0.1 1.0
OD1 H:ASN565 4.2 0.8 1.0
O H:HIS567 4.2 0.0 1.0
O H:LEU563 4.3 1.0 1.0
ND1 H:HIS488 4.4 0.6 1.0
C7 H:TPP703 4.5 0.9 1.0
CA H:GLY539 4.7 92.8 1.0
N H:SER540 4.7 91.6 1.0
CG H:HIS488 4.9 0.6 1.0
C H:ASP536 5.0 0.3 1.0

Magnesium binding site 4 out of 8 in 6u9h

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Magnesium binding site 4 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg701

b:0.7
occ:1.00
 O1A I:TPP703 2.1 1.0 1.0
O3A I:TPP703 2.1 1.0 1.0
O1B I:TPP703 2.2 1.0 1.0
PB I:TPP703 2.4 1.0 1.0
CB I:ASP538 2.5 0.9 1.0
PA I:TPP703 2.6 1.0 1.0
O I:HIS567 2.7 0.2 1.0
O3B I:TPP703 2.9 1.0 1.0
N I:ASP538 3.1 0.9 1.0
CA I:ASP538 3.3 0.9 1.0
CA I:LEU568 3.4 1.0 1.0
OD1 I:ASN565 3.4 0.0 1.0
CG I:ASP538 3.5 0.9 1.0
N I:GLY569 3.5 0.9 1.0
OD2 I:ASP538 3.5 0.9 1.0
C I:HIS567 3.6 0.2 1.0
O7 I:TPP703 3.6 1.0 1.0
O2A I:TPP703 3.8 1.0 1.0
N I:GLY539 3.8 97.7 1.0
O2B I:TPP703 3.9 1.0 1.0
N I:LEU568 3.9 1.0 1.0
C I:LEU568 4.0 1.0 1.0
C I:ASP538 4.1 0.9 1.0
C7 I:TPP703 4.2 1.0 1.0
C I:GLY537 4.3 1.0 1.0
CB I:LEU568 4.5 1.0 1.0
CG I:ASN565 4.5 0.0 1.0
OD1 I:ASP538 4.6 0.9 1.0
CA I:GLY569 4.6 0.9 1.0
CA I:GLY537 4.7 1.0 1.0
CG I:LEU568 4.7 1.0 1.0
N I:HIS567 4.8 0.2 1.0
CA I:HIS567 4.9 0.2 1.0
OE1 I:GLN487 4.9 0.2 1.0
ND2 I:ASN565 4.9 0.0 1.0
O I:LEU563 4.9 0.4 1.0
C6 I:TPP703 5.0 1.0 1.0

Magnesium binding site 5 out of 8 in 6u9h

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Magnesium binding site 5 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg701

b:88.7
occ:1.00
 OD1 L:ASP538 2.0 0.6 1.0
O3A L:TPP703 2.1 0.3 1.0
O2A L:TPP703 2.1 0.3 1.0
N L:ASP538 2.1 0.6 1.0
PB L:TPP703 2.4 0.3 1.0
O2B L:TPP703 2.5 0.3 1.0
CA L:GLY537 2.5 98.5 1.0
PA L:TPP703 2.5 0.3 1.0
O1B L:TPP703 2.6 0.3 1.0
C L:GLY537 2.6 98.5 1.0
CG L:ASP538 3.2 0.6 1.0
CA L:ASP538 3.3 0.6 1.0
O7 L:TPP703 3.5 0.3 1.0
N L:GLY539 3.6 95.6 1.0
CB L:ASP538 3.7 0.6 1.0
O1A L:TPP703 3.8 0.3 1.0
O L:GLY537 3.8 98.5 1.0
N L:GLY537 3.9 98.5 1.0
O3B L:TPP703 3.9 0.3 1.0
C L:ASP538 4.0 0.6 1.0
OD2 L:ASP538 4.2 0.6 1.0
O L:LEU563 4.2 0.3 1.0
ND1 L:HIS488 4.2 0.1 1.0
OD1 L:ASN565 4.2 0.4 1.0
O L:HIS567 4.3 0.9 1.0
C7 L:TPP703 4.6 0.3 1.0
CE1 L:HIS488 4.8 0.1 1.0
CG L:HIS488 4.8 0.1 1.0
CA L:GLY539 4.8 95.6 1.0
N L:SER540 4.9 94.1 1.0
C L:ASP536 4.9 0.8 1.0
C L:LEU563 4.9 0.3 1.0
OG L:SER540 5.0 94.1 1.0

Magnesium binding site 6 out of 8 in 6u9h

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Magnesium binding site 6 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg701

b:0.1
occ:1.00
 O1A M:TPP703 2.1 0.9 1.0
O3A M:TPP703 2.1 0.9 1.0
O1B M:TPP703 2.2 0.9 1.0
PB M:TPP703 2.4 0.9 1.0
CB M:ASP538 2.5 1.0 1.0
PA M:TPP703 2.6 0.9 1.0
O M:HIS567 2.7 0.2 1.0
O3B M:TPP703 2.9 0.9 1.0
N M:ASP538 3.2 1.0 1.0
CA M:LEU568 3.3 0.5 1.0
CA M:ASP538 3.4 1.0 1.0
N M:GLY569 3.4 0.3 1.0
OD1 M:ASN565 3.4 0.7 1.0
CG M:ASP538 3.4 1.0 1.0
OD2 M:ASP538 3.5 1.0 1.0
C M:HIS567 3.5 0.2 1.0
O7 M:TPP703 3.6 0.9 1.0
O2A M:TPP703 3.8 0.9 1.0
N M:LEU568 3.8 0.5 1.0
N M:GLY539 3.9 98.4 1.0
O2B M:TPP703 3.9 0.9 1.0
C M:LEU568 3.9 0.5 1.0
C M:ASP538 4.1 1.0 1.0
C7 M:TPP703 4.2 0.9 1.0
C M:GLY537 4.4 0.8 1.0
CG M:ASN565 4.4 0.7 1.0
CB M:LEU568 4.4 0.5 1.0
CA M:GLY569 4.5 0.3 1.0
OD1 M:ASP538 4.5 1.0 1.0
CG M:LEU568 4.7 0.5 1.0
ND2 M:ASN565 4.8 0.7 1.0
CA M:HIS567 4.8 0.2 1.0
N M:HIS567 4.8 0.2 1.0
CA M:GLY537 4.8 0.8 1.0
OE1 M:GLN487 4.9 0.8 1.0
C6 M:TPP703 5.0 0.9 1.0

Magnesium binding site 7 out of 8 in 6u9h

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Magnesium binding site 7 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg701

b:86.3
occ:1.00
 OD1 P:ASP538 2.0 0.8 1.0
O2A P:TPP703 2.0 0.2 1.0
N P:ASP538 2.1 0.8 1.0
O3A P:TPP703 2.1 0.2 1.0
O1B P:TPP703 2.1 0.2 1.0
PB P:TPP703 2.3 0.2 1.0
CA P:GLY537 2.5 96.2 1.0
PA P:TPP703 2.5 0.2 1.0
C P:GLY537 2.6 96.2 1.0
O2B P:TPP703 2.7 0.2 1.0
CG P:ASP538 3.1 0.8 1.0
CA P:ASP538 3.3 0.8 1.0
O7 P:TPP703 3.6 0.2 1.0
N P:GLY539 3.6 93.0 1.0
CB P:ASP538 3.7 0.8 1.0
O1A P:TPP703 3.7 0.2 1.0
O P:GLY537 3.8 96.2 1.0
O3B P:TPP703 3.8 0.2 1.0
N P:GLY537 3.9 96.2 1.0
C P:ASP538 3.9 0.8 1.0
O P:LEU563 4.2 0.8 1.0
OD2 P:ASP538 4.2 0.8 1.0
OD1 P:ASN565 4.2 0.1 1.0
ND1 P:HIS488 4.2 0.2 1.0
O P:HIS567 4.3 0.2 1.0
C7 P:TPP703 4.6 0.2 1.0
CG P:HIS488 4.7 0.2 1.0
CA P:GLY539 4.8 93.0 1.0
N P:SER540 4.8 90.9 1.0
CB P:HIS488 4.8 0.2 1.0
C P:ASP536 4.9 0.3 1.0
CE1 P:HIS488 4.9 0.2 1.0
C P:LEU563 5.0 0.8 1.0
O P:ASP536 5.0 0.3 1.0

Magnesium binding site 8 out of 8 in 6u9h

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Magnesium binding site 8 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg701

b:0.2
occ:1.00
 O1A Q:TPP703 2.1 0.9 1.0
O3A Q:TPP703 2.1 0.9 1.0
O1B Q:TPP703 2.2 0.9 1.0
PB Q:TPP703 2.4 0.9 1.0
CB Q:ASP538 2.5 0.3 1.0
PA Q:TPP703 2.6 0.9 1.0
O Q:HIS567 2.7 0.3 1.0
O3B Q:TPP703 2.9 0.9 1.0
N Q:ASP538 3.1 0.3 1.0
CA Q:ASP538 3.3 0.3 1.0
OD1 Q:ASN565 3.4 0.5 1.0
CA Q:LEU568 3.4 0.4 1.0
CG Q:ASP538 3.5 0.3 1.0
N Q:GLY569 3.5 0.1 1.0
OD2 Q:ASP538 3.6 0.3 1.0
C Q:HIS567 3.6 0.3 1.0
O7 Q:TPP703 3.6 0.9 1.0
O2A Q:TPP703 3.7 0.9 1.0
N Q:GLY539 3.8 97.7 1.0
O2B Q:TPP703 3.9 0.9 1.0
N Q:LEU568 3.9 0.4 1.0
C Q:LEU568 4.0 0.4 1.0
C Q:ASP538 4.1 0.3 1.0
C7 Q:TPP703 4.2 0.9 1.0
C Q:GLY537 4.3 0.5 1.0
CG Q:ASN565 4.5 0.5 1.0
CB Q:LEU568 4.5 0.4 1.0
OD1 Q:ASP538 4.6 0.3 1.0
CA Q:GLY569 4.6 0.1 1.0
CA Q:GLY537 4.7 0.5 1.0
CG Q:LEU568 4.8 0.4 1.0
ND2 Q:ASN565 4.8 0.5 1.0
N Q:HIS567 4.9 0.3 1.0
CA Q:HIS567 4.9 0.3 1.0
OE1 Q:GLN487 4.9 0.2 1.0
O Q:LEU563 4.9 0.1 1.0
C6 Q:TPP703 5.0 0.9 1.0

Reference:

L.W.Guddat, Y.S.Low, Z.Rao. Fungal and Plant Acetohydroxyacid Synthases Form Complex Multi-Subunit Assemblies in the Shape of A Maltese Cross. To Be Published.
Page generated: Tue Oct 1 20:53:07 2024

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